Lus10023718 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24320 1548 / 0 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
AT4G02070 112 / 8e-25 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
AT3G24495 107 / 4e-23 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
AT5G54090 95 / 2e-19 DNA mismatch repair protein MutS, type 2 (.1)
AT4G25540 87 / 5e-17 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1)
AT3G18524 78 / 4e-14 ATMSH2, MSH2 MUTS homolog 2 (.1)
AT1G65070 74 / 5e-13 DNA mismatch repair protein MutS, type 2 (.1.2)
AT4G17380 71 / 3e-12 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
AT3G20475 63 / 1e-09 ATMSH5 MUTS-homologue 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014462 2115 / 0 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Lus10010010 101 / 3e-21 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Lus10017724 96 / 1e-19 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Lus10005743 92 / 2e-18 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1)
Lus10027452 87 / 7e-18 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1)
Lus10018187 86 / 2e-16 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2)
Lus10033095 84 / 5e-16 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Lus10025647 84 / 5e-16 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2)
Lus10032917 82 / 1e-15 AT5G54090 808 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G065000 1731 / 0 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Potri.014G121701 105 / 2e-22 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Potri.006G159200 100 / 5e-21 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Potri.006G156314 100 / 5e-21 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Potri.015G142900 89 / 1e-17 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1)
Potri.012G005000 83 / 8e-16 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
Potri.004G041900 83 / 1e-15 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2)
Potri.012G060000 79 / 2e-14 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1)
Potri.001G156200 68 / 3e-11 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
Potri.008G191051 59 / 4e-09 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01624 MutS_I MutS domain I
CL0023 P-loop_NTPase PF00488 MutS_V MutS domain V
Representative CDS sequence
>Lus10023718 pacid=23148333 polypeptide=Lus10023718 locus=Lus10023718.g ID=Lus10023718.BGIv1.0 annot-version=v1.0
ATGTACTGGCTAGCCAGTAGAAATTTTGTGGTTTCTCTACCCAAGTGTCGATCGCCCTTCTCCCTCTTCTCCATCCTCCGCTCCCCTTCCTCCACCTACT
GCTCCTTCAGTCACTCCCTTCCCACTCTCCATAGAAGGAGGGTTGGTGAAGGGGCTCAGTGCTTTAAAGATGTTAAGGTATCCAAGGGGAATTCTAGAGC
AACCAGGAAACTTAAGGCATTGGATGATGCTTTGGCTGAGAAGGACCTAACCCACTTATTGTGGTGGAAGGAGAAGCTGGAGAACTGCAGGAAGCCTTCT
ACTCTTCATCTTATCAATAGGCTTGTGTACACCAATTTGTTGGGCGTGGATGCAAACCTAAGAAATGGGAGTTTGAAGGAAGGAAATCTAAATTGGGAAA
TGTTACAGTTCAAGTCAAAATTTCCGCGTGAGGTTGGAGACTTTTATGAATCCGTTGGAGTCGATGCTTGCATTCTTGTGGAATATGCTGGGTTAAACCC
GTTTGGAGGATTGCGTTCTGATAGTATTCCTAAAGCTGGCTGCCCAGTTGTGAACCTTCGGCAAACTTTAGATGACTTGACAAGGAATGGGTACTCAGTA
TGCATAGTGGAAGAAGTTCAAGGTCCAACAACAGCTCGTTCTAGGAAAGATCGTTTTATATCTGGGCATGCCCATCCTGGTAGTCCATATGTATTTGGAC
TTGTTGGTGCTGATCATGATCTGGATTTTCCTGAACCAATGCCTGTAGTTGGTATATCACATTCAGCTAGGGGTTATTGCATGACATCTGTCTTAGAAAC
TATGAAAACATATTCCTTAGAGGATGGTTTAACAGAAGAGGCATTGGTTGCCAAACTGCGCACATGTCAGTCCCATCATCTGTTTCTTCACAAATCATTG
AAACACAACCCCTCAGGAACTTCTCGCTGGGGAGAATTTGGTAAGGGTGGCTTGGTGTGGGGGGAATGTAGCTCTCGACACTTTGAGTGGCTTGAAGGTG
ATCCTGTGTCCGAGTTATTGCTTAAGGTCAGTGAGCTGTATGGACTGGGTGATGAAGTTGCATTCCGAAATGTCACTGTGTTGTCAGAGAGCAGGCCTCG
GTCTCTACATCTTGGAACAGCCACTCAAATTGGTGCTATACCTACAGAAGGAATACCTTCTCTGTTGAAAGTGTTACTACCGTCAAGTTGTACAGGTCTT
CCTGCATTGTATGTCAGGGATCTTCTTCTAAATCCTCCAGCTTATGAAATTGCTTCAACAATTCAAGCAACATGTAAACTCATGAGCAATGTCACATGTT
CAATCCCAGAGTTCACTTGTATTTCATCTGCAAAGCTAGTGAAGCTGCTTGAACAGCGGGAAGCCAATCATTTGGAATTTTGTAGAATAAGAAATGTAGT
GGACGAAGTATTGCAGATGTATAGCAACCCGGAGCTTAACGGTATCTTGAAATCTCTGATGGATCCTACTTGGGTGGCCACTGGGTTGAAAATTGACTTT
GAGACGCTTGTTAATGAATGCAAACTGGTTTCTGGTAGAATTTGCGAAATGATATCTCTTGATGGAGAGAATGACTCCAAAATAAGCAGCTCTTCTGTCA
TTCCATGTGAATTCTTTGAAGAAATGGAATCTTGTTGGAAAGGACGTGTAAAGAGAGTTCACATACATGAGGAATTTGCAGAAGTAGAAATGGCAGCTGA
GGCCTTGTCATTGGCAGTCAATGAAGATTTCATTCCAATCATATCAAGAATTAAAGCAACAACTGCCCCCTTTGGTGGACCAAAGGGTGAAATACTATAT
GCTCGAGAACATGGATCTGTTTGGTTTAAGGGAAAAAGGTTTGCACCAGCCGTATGGGCTGGTACTCCAGGAGAAGAGCAGATCAAACAGCTTAAATCTG
CTATAGATTCGAAAGGCAGAAAAGTTGGTGATGAATGGTTTACTACTATGAAAGTGGAAGATGCTTTAGCAAAGTACCACGAAGCAGGTGAGAAGGCTAA
ATCAAAGGTCTTGGAGTTGCTCAGGGGACTTTCTGCCGAGTTGCAAACAAAGATCAACGTCCTTGTCTTTGCTTCAATGTTACTTGTTATTGCAAAGGCA
TTGTTTGCTCATAATTTAAACTATGGTCTGATATTCATTACTGTATTTCTCCAACGATTTCCTAAGTCTTCTTCATTGGTCAATTACAGTGAAGGGAGGC
GTAGGAAATGGGCCTTTCCGTCTCTTGTTAGGTTTGATAATCCTAAGGCTATGATTTCTTCGGAAGGAGCACAAACACATCACATGAAGTTGATTGGCTT
AACTCCATACTGGTTCGATGTGGCAGAAGGTGGTGCTGTATACAACACAGTAGACATGCAGTCGCTGTTTCTGTTGACAGGACCAAATGGTGGTGGTAAA
TCCAGCTTGCTTCGATCAATTTGTGCTTCTGCTTTACTTGGTATATGTGGATTTATGGTGCCTGCAGAATCAGCCGTGATTCCTCAGTTTGATGCTATTA
TGCTGCACATGAAATCATACGACAGTCCTGCAGATGGGAAAAGTTCATTTCAGGTAGAAATGTCAGAAATCCGCTCTATTCTGAGTGGATCGACATCAAG
AAGCCTTGTCCTCGTGGATGAAATATGCCGAGGGACTGAAACAGCCAAGGGAACATGCATTGCTGGAAGCATTGCTAAACCAGCCAAGGGAACATGCATT
GCTGGAAGCATTGTTGAGAGACTTGATAAAATTGGCTGTTTGGGTATTATTTCTACTCATCTCCATGGAATATTTGTTTTGCCACTGAATACCAAGAACA
CTGTTCATAAAGCAATGGGAACTGAATACATTGATGGGCAACCAAAACCAACCTGGAGGCTGATAGATGGCATATGTAGGGAGAGCCTAGCTTTTGAAAC
AGCCAAGAACGAAGGAATCCCCAACTCTGTACTCCAAAGAGCAGAAAGCTTGTACTTGTCGGCTTATCGTATAGATGGGCATTCAGCAAAGGATACAAAG
CCAGGACAATTTTCTTGCGGTGGAGAAGCTAACGATTCCGATGAAGCCCATCCTTCTTCTAATGGAGCTGAAACAGGAAATCTTGATCATGATATTGATT
CAACTAGAAAAAACAGATTATCAAACCGCAAAGATGTTGAGAGTGCCGTCACGATAATATGCCAGAGGAGGCTGATTGAGCTGTACAAGCAGAGGGACAT
TTTGGATGTCCAAGTGGTGCATTGTGTAGCCATTGATGCTAGGCAACAGCCACCACCATCTACAATTGGTGCTTCAGCAGTATACGTAATGTTGAGACCG
GACAAGAAACTATACGTTGGAGTGAATCCTAATAAGTTTTTCTCTGGTGATTCTGGCAAACAGACAGATGATCTAGAAGGCAGAGTCCGAGCCCACCGTG
CAAAGGAAGGGCTGCAGAATGCCTCTTTTCTTTACTTGATAGTACCAGGAAAGAGCATTGCCTGCCAGCTTGAGACACTTCTCATCAACCAGCTCCCTAG
CAGAGGTTTCCAGCTTTCAAATGTTGCAGATGGTAAACATCGGAATTTCGGCACAAGCAATCTGTCATTAGAAAGTGATTGTTCCTTAGTTCACTGA
AA sequence
>Lus10023718 pacid=23148333 polypeptide=Lus10023718 locus=Lus10023718.g ID=Lus10023718.BGIv1.0 annot-version=v1.0
MYWLASRNFVVSLPKCRSPFSLFSILRSPSSTYCSFSHSLPTLHRRRVGEGAQCFKDVKVSKGNSRATRKLKALDDALAEKDLTHLLWWKEKLENCRKPS
TLHLINRLVYTNLLGVDANLRNGSLKEGNLNWEMLQFKSKFPREVGDFYESVGVDACILVEYAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTRNGYSV
CIVEEVQGPTTARSRKDRFISGHAHPGSPYVFGLVGADHDLDFPEPMPVVGISHSARGYCMTSVLETMKTYSLEDGLTEEALVAKLRTCQSHHLFLHKSL
KHNPSGTSRWGEFGKGGLVWGECSSRHFEWLEGDPVSELLLKVSELYGLGDEVAFRNVTVLSESRPRSLHLGTATQIGAIPTEGIPSLLKVLLPSSCTGL
PALYVRDLLLNPPAYEIASTIQATCKLMSNVTCSIPEFTCISSAKLVKLLEQREANHLEFCRIRNVVDEVLQMYSNPELNGILKSLMDPTWVATGLKIDF
ETLVNECKLVSGRICEMISLDGENDSKISSSSVIPCEFFEEMESCWKGRVKRVHIHEEFAEVEMAAEALSLAVNEDFIPIISRIKATTAPFGGPKGEILY
AREHGSVWFKGKRFAPAVWAGTPGEEQIKQLKSAIDSKGRKVGDEWFTTMKVEDALAKYHEAGEKAKSKVLELLRGLSAELQTKINVLVFASMLLVIAKA
LFAHNLNYGLIFITVFLQRFPKSSSLVNYSEGRRRKWAFPSLVRFDNPKAMISSEGAQTHHMKLIGLTPYWFDVAEGGAVYNTVDMQSLFLLTGPNGGGK
SSLLRSICASALLGICGFMVPAESAVIPQFDAIMLHMKSYDSPADGKSSFQVEMSEIRSILSGSTSRSLVLVDEICRGTETAKGTCIAGSIAKPAKGTCI
AGSIVERLDKIGCLGIISTHLHGIFVLPLNTKNTVHKAMGTEYIDGQPKPTWRLIDGICRESLAFETAKNEGIPNSVLQRAESLYLSAYRIDGHSAKDTK
PGQFSCGGEANDSDEAHPSSNGAETGNLDHDIDSTRKNRLSNRKDVESAVTIICQRRLIELYKQRDILDVQVVHCVAIDARQQPPPSTIGASAVYVMLRP
DKKLYVGVNPNKFFSGDSGKQTDDLEGRVRAHRAKEGLQNASFLYLIVPGKSIACQLETLLINQLPSRGFQLSNVADGKHRNFGTSNLSLESDCSLVH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G24320 CHM1, ATMSH1, C... CHLOROPLAST MUTATOR, MUTL prot... Lus10023718 0 1
AT3G24320 CHM1, ATMSH1, C... CHLOROPLAST MUTATOR, MUTL prot... Lus10014462 1.4 0.9168
AT3G10310 P-loop nucleoside triphosphate... Lus10031058 9.2 0.8834
AT4G01270 RING/U-box superfamily protein... Lus10005127 12.0 0.8758
AT2G04235 unknown protein Lus10025175 14.5 0.8920
AT5G40840 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(... Lus10041587 19.9 0.8888
AT4G15880 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cystein... Lus10035382 20.7 0.8829
AT2G24120 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 31... Lus10034355 21.2 0.8611
AT1G18450 ATARP4 actin-related protein 4 (.1) Lus10032484 23.7 0.8614
AT5G63960 EMB2780 DNA binding;nucleotide binding... Lus10033513 24.8 0.8848
AT2G21440 RNA-binding (RRM/RBD/RNP motif... Lus10022044 25.2 0.8832

Lus10023718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.