Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33310 219 / 1e-70 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT1G04550 211 / 2e-67 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT4G28640 173 / 1e-52 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT1G04100 143 / 6e-41 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1) AT4G14550 130 / 4e-36 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G16500 126 / 2e-34 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G51950 125 / 5e-34 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1) AT3G23050 123 / 2e-33 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT2G22670 124 / 3e-33 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT4G29080 124 / 6e-33 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014464 [exp] 471 / 1e-168 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10022868 [exp] 166 / 4e-49 AT4G28640 198 / 1e-62 indole-3-acetic acid inducible 11 (.1.2.3) Lus10039414 [exp] 139 / 4e-39 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10034962 [exp] 137 / 4e-38 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10024958 [exp] 137 / 1e-37 AT4G28640 162 / 3e-48 indole-3-acetic acid inducible 11 (.1.2.3) Lus10038285 [exp] 129 / 4e-35 AT3G16500 224 / 3e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10025817 [exp] 129 / 8e-35 AT3G16500 231 / 1e-74 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038284 [exp] 129 / 3e-34 AT3G16500 223 / 6e-71 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10012984 [exp] 125 / 3e-33 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172400 [exp] 306 / 8e-104 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.010G065200 [exp] 304 / 6e-103 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 191 / 9e-59 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.005G053900 [exp] 130 / 5e-36 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.013G041400 [exp] 129 / 9e-36 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.010G078300 [exp] 128 / 7e-35 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.008G161200 [exp] 126 / 2e-34 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053800 [exp] 123 / 7e-34 AT5G43700 239 / 7e-81 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.001G190300 [exp] 126 / 1e-33 AT3G16500 235 / 3e-76 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.002G108000 [exp] 125 / 4e-33 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10023719 pacid=23148373 polypeptide=Lus10023719 locus=Lus10023719.g ID=Lus10023719.BGIv1.0 annot-version=v1.0 ATGGACGGCGGAGGTCTTTCTTTACTCGGCGGCGGCGGCAGTGGTTGTGGTGGGTTATCTGCTAATTCCACCAATGTCTCCACGGTGGTGGATGCCGATC AGACCGATGACCACCTGGAGCTGGGTCTTGGTCTCAGCCTCGGCGGCAGCGCTGGAAAGGGCAAATTAACAAGTGGATGGGGCGAGTGTGGGAGAATCCT CACTGCCAAGGATTGTACTCATGGAAGCAACAAGAAGCCCAACCCTAATACTTCTATCTCTTGTTCCTCTAATTCCCCTTTTGGTAGTGGTGCTGCTACT AAGAAGAGAGCTGCTGACTCTGTCTCCCATGAAGGCGGAGGAGCATCCCCTACCTCTGCCAGTCAGGTTGTTGGTTGGCCACCCATTAGAGCTTACAGGA TGAACAGCTTGGTCAACTTGGCTAAAGCGGCTAGAGGTGCTGAAGATGACAGCAACAACAGCAAGTCAGCTGTTGCTAGTGGTGGTAATGGTGAATATGA CAAATCATCATCAAAGGATTCCAATTTGAAGAAAAAGATTTGCAATGGTGAAAAGACTACATCTTGTGAAAAGGGTCATCATCTTGGGTTTGTGAAGGTG AACATGGATGGTGTCCCAATCGGAAGGAAGATTGATTTGAATGCTCATGTCTGTTATGAGACTCTGGCTCAAACATTGGAGGATATGTTCTTCAGGTCCA ACCCTTCTCTCAATTCCATAGGTGGAGAAAAGCAGCAACAAGCTTTGAAACCTTGTATGCTTTTGGATGGATCCTCTGAATTTGTGCTGACTTATGAGGA TAAAGATGGAGATTGGATGCTGGTTGGAGATGTCCCCTGGCAGATGTTCCTCAGCTCTGTGAAGAGGCTTAGGATCATGAGAACATCTGAAGCTAATGGA CTTGCAGCAGCAGCTCCTAGGTTCGAAGAAAGGAGCGACAGACAAAGAAGCAAGCCTTCTTAG
AA sequence Show only first row Show all	>Lus10023719 pacid=23148373 polypeptide=Lus10023719 locus=Lus10023719.g ID=Lus10023719.BGIv1.0 annot-version=v1.0 MDGGGLSLLGGGGSGCGGLSANSTNVSTVVDADQTDDHLELGLGLSLGGSAGKGKLTSGWGECGRILTAKDCTHGSNKKPNPNTSISCSSNSPFGSGAAT KKRAADSVSHEGGGASPTSASQVVGWPPIRAYRMNSLVNLAKAARGAEDDSNNSKSAVASGGNGEYDKSSSKDSNLKKKICNGEKTTSCEKGHHLGFVKV NMDGVPIGRKIDLNAHVCYETLAQTLEDMFFRSNPSLNSIGGEKQQQALKPCMLLDGSSEFVLTYEDKDGDWMLVGDVPWQMFLSSVKRLRIMRTSEANG LAAAAPRFEERSDRQRSKPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	0	1
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10014464 [exp]	1.0	0.9268
AT1G75810			unknown protein		Lus10033134 [exp]	2.0	0.8662
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	5.9	0.8348
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	16.4	0.8160
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	17.5	0.8407
AT5G22400			Rho GTPase activating protein ...		Lus10004864 [exp]	20.1	0.8315
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10028579 [exp]	20.7	0.8504
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	23.5	0.8077
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	24.2	0.8127
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10030068 [exp]	26.3	0.7892

Compare expression of checked genes

Lus10023719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.