Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47190 181 / 7e-57 Ribosomal protein L19 family protein (.1) AT4G17560 178 / 7e-56 Ribosomal protein L19 family protein (.1) AT4G11630 103 / 7e-27 Ribosomal protein L19 family protein (.1) AT5G11750 103 / 8e-27 Ribosomal protein L19 family protein (.1) AT1G24240 81 / 2e-18 Ribosomal protein L19 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014467 [exp] 337 / 4e-118 AT4G17560 223 / 9e-74 Ribosomal protein L19 family protein (.1) Lus10041948 [exp] 101 / 9e-26 AT4G11630 219 / 4e-72 Ribosomal protein L19 family protein (.1) Lus10017958 [exp] 59 / 5e-10 AT4G11630 155 / 3e-46 Ribosomal protein L19 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152200 [exp] 187 / 3e-59 AT4G17560 177 / 1e-55 Ribosomal protein L19 family protein (.1) Potri.012G086800 [exp] 91 / 4e-22 AT4G11630 204 / 4e-66 Ribosomal protein L19 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01245 [flax] [poplar] Ribosomal_L19 Ribosomal protein L19
Representative CDS sequence Show only first row Show all	>Lus10023720 pacid=23148345 polypeptide=Lus10023720 locus=Lus10023720.g ID=Lus10023720.BGIv1.0 annot-version=v1.0 ATGGCATCCAAAATTCTCCCTCAAGCGCTACTTACCATCCCCATCAACTCTTCCCCTGCTAGGAGGCTTACCTTCTCAACCTATCGCTCCGCCAAATTCC CCTCTTCCACTTCAGTATCTCGAGTTTGCAGCTATGGGTTTTCCTCCACCTCAACTCCTCTCCCTGAATTCGTCGCCGCCTTCTCCAGACACAGTCTTGT AGCCAGAGCGGAGCCGGAGGGTAGTGATGGTGCAGCGGTGGGAGACGAGTCTCCGGAGGTAGTAGCTGAAGCTAGTGAGAGTGTCGAAGAAACCGCCGTG GAGGGCGAAGGAGACGCAGAAGCAGAAGTAGAGAGGAAGCCGAGGCAGCAAAGAGTCAAGCTTGGGGACGTAATGGGGATATTGAACAAGCGAGCAGTTG AGGCATCTGTGGAAGTGAGGCCGCTTCCAGATATCAGAACTGGCGATGTAGTGGAGATCAAACTGGAAGTTCCAACAAATAGACGTAGGCTCTCCATTTA CAAAGGAATCGTCATATCCAGGCAAAATGCTGGTATCCACACCACTATTCGCATCCGCAGGATCATTGCCGGCATAGGTGTTGAGATTGTCTTCCCTCTC TACTCACCGAGTATCAGGGAGATCAGAGTACTGAGTCACAGAAAGGTGAGGAGAGCAAGGTTGTATTATCTGAGAGACAAACTTCCCAGGCTTTCAACCT TCAAATGA
AA sequence Show only first row Show all	>Lus10023720 pacid=23148345 polypeptide=Lus10023720 locus=Lus10023720.g ID=Lus10023720.BGIv1.0 annot-version=v1.0 MASKILPQALLTIPINSSPARRLTFSTYRSAKFPSSTSVSRVCSYGFSSTSTPLPEFVAAFSRHSLVARAEPEGSDGAAVGDESPEVVAEASESVEETAV EGEGDAEAEVERKPRQQRVKLGDVMGILNKRAVEASVEVRPLPDIRTGDVVEIKLEVPTNRRRLSIYKGIVISRQNAGIHTTIRIRRIIAGIGVEIVFPL YSPSIREIRVLSHRKVRRARLYYLRDKLPRLSTFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	0	1
AT4G17560			Ribosomal protein L19 family p...		Lus10014467 [exp]	1.0	0.9796
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	2.4	0.9612
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	2.4	0.9405
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	6.0	0.9461
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	7.2	0.9449
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	7.4	0.9411
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10006267 [exp]	7.6	0.9057
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	8.8	0.9397
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	9.2	0.9266
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10028569 [exp]	9.3	0.9201

Compare expression of checked genes

Lus10023720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.