Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43960 256 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G60980 160 / 1e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G25150 130 / 2e-32 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 120 / 3e-29 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT2G03640 94 / 2e-20 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT1G13730 92 / 1e-19 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT3G07250 75 / 6e-14 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G69250 72 / 2e-13 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G55540 43 / 0.0004 nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014469 [exp] 536 / 0 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022873 [exp] 298 / 2e-95 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 144 / 3e-37 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022765 [exp] 141 / 2e-36 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 132 / 2e-32 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10024953 [exp] 108 / 6e-27 AT5G43960 159 / 8e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10036918 [exp] 54 / 2e-07 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10026668 [exp] 50 / 2e-06 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10037066 [exp] 49 / 7e-06 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065500 [exp] 455 / 1e-156 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G257000 [exp] 317 / 1e-102 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 293 / 7e-94 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 148 / 5e-39 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.015G058700 [exp] 147 / 2e-38 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 144 / 1e-37 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 140 / 8e-36 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G157800 [exp] 134 / 7e-34 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.003G170800 [exp] 44 / 4e-05 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2) Potri.001G057500 [exp] 43 / 5e-05 AT1G27970 228 / 4e-79 nuclear transport factor 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10023722 pacid=23148336 polypeptide=Lus10023722 locus=Lus10023722.g ID=Lus10023722.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTTATGCTATGCCGGTTACTGCTGCTCAGGTAGGGACGTATTTTGTGAGACAATACTATGAAGTGCTGCAGTCTCAACCGGCCCTTGGTC ACCAGTTCTATAGTGATTCCAGCACCATGCTTCGCGTTGATGGCTCTACTCGAGAATCCTACTCCACGTTGCTTGATATTCATTCACTCATTATGTGCCT CAACTACACCGCTATTGAAATCAAGACGGCACATGCGTTGGAATCGTGGAACTGTGGGGTTCTTGTGATGGTGTCTGGACATTTGCAGTCGATGAACTTC AGTCGAACCAGGAAGTTTGTCGAGACGTTTTTCTTAGCACCCCAGGATAAAGGGTATTTTGTTCTCAACGACGTGTTCCACTTCATTGAAGAGGAGCAAC ACCACCATCCGGGTGTATTGTTAGCACAAAGGAATCATGATTCCAATCTTATTGCTCCTCCTACCGCAATTTCTGAACCAGTGTCAAATTATTTGTTCGA TGGAGAAAGTCAGTCGAAGGAGTTCCTAGCTCCTACGGATACTGTGGAAAATGGCCAAGTTGATAACTATGGGTTGCCTCCTCAAAAGGCGTTTCAGCAG GTCTTAGAGCCGGAACACATTGCAGAGCAAGATGCAGTGGAAGAATCTAATGGGTCATTTGATTTTCCAGTGAATGCCCGTCAAGACCACCTTCCTCCTA GTCTTGAAGAAGCTGCCGTAGAACCACTAAGACACACTTATGCTTCAATTTTACGGGTTGCTAAGGAGCAACCTGCACCTCCAGCAACATCAGAACGAAA CCACAACTCTCCAGCTACTGCTCAAACGACGATTGTGACATCAAATTCCATCGATAACTACACTACTGACAATGTTGATGAGCCTTTAGGTGCAGAAGAT GAAGATGAAATAAGATCCGTATATGTTCGGAACTTGGCACCTACTGCCTCTGAAGAAGAGATTGAGGAGGAATTCACCAAGTTTGGGAAAGTAGCACCTG AAGGTGTTGTCATTAGGAGTCGCCAGGACGTTGGTGTATGTTATGCATTTGTTGAATTCGAGGACATGAATGGTGTTCTCAATGCTGTGAAAGCGGGCAG TGCACAGGTTGCCGGCAGGCCAGTATACATTGAGGAACGGAGACCAAACAGTTACATTCCATCTCGATTTGGAAGTATGTATTGTGGTTGCTCCCATATT CACTCTAGCATTGATTGGATGCCTACCACGATTAAATGTGAAACCTATGGACTTACGATTGTAGTTATCTACCTCTTGTTCATGCCTCTTGTTCCCCTTC CATGTCTATCTTTGAAGAACATCTTCTATTCACTTGACGAATCATCTGAAGTGTGGGCTTTGGTTGGCATAATGGGACAGGGGGGAGAGGCAGGGGACGG GGCAGCTACTACCAAGCAGACGCTACTCGTGGTCGTTTTGGTTCACGAAGTTTCAGTAGGGGAGGCAGCTACGACGGAGAGTACAACAGAGGCAGAGGAA ATGGATATTACAGGCCAATTAATCGTCAAGACATGGCATCGATGGAGAGTGGACAAAATGAGTCCGACTATACCTCTTAGTCACAAATTTTAG
AA sequence Show only first row Show all	>Lus10023722 pacid=23148336 polypeptide=Lus10023722 locus=Lus10023722.g ID=Lus10023722.BGIv1.0 annot-version=v1.0 MASPYAMPVTAAQVGTYFVRQYYEVLQSQPALGHQFYSDSSTMLRVDGSTRESYSTLLDIHSLIMCLNYTAIEIKTAHALESWNCGVLVMVSGHLQSMNF SRTRKFVETFFLAPQDKGYFVLNDVFHFIEEEQHHHPGVLLAQRNHDSNLIAPPTAISEPVSNYLFDGESQSKEFLAPTDTVENGQVDNYGLPPQKAFQQ VLEPEHIAEQDAVEESNGSFDFPVNARQDHLPPSLEEAAVEPLRHTYASILRVAKEQPAPPATSERNHNSPATAQTTIVTSNSIDNYTTDNVDEPLGAED EDEIRSVYVRNLAPTASEEEIEEEFTKFGKVAPEGVVIRSRQDVGVCYAFVEFEDMNGVLNAVKAGSAQVAGRPVYIEERRPNSYIPSRFGSMYCGCSHI HSSIDWMPTTIKCETYGLTIVVIYLLFMPLVPLPCLSLKNIFYSLDESSEVWALVGIMGQGGEAGDGAATTKQTLLVVVLVHEVSVGEAATTESTTEAEE MDITGQLIVKTWHRWRVDKMSPTIPLSHKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	0	1
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	2.4	0.9439
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	2.4	0.9465
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	2.6	0.9384
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	2.8	0.9440
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	3.7	0.9295
AT5G43960			Nuclear transport factor 2 (NT...		Lus10014469 [exp]	4.7	0.9192
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	5.8	0.9222
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	6.0	0.9332
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	6.1	0.9012
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	6.3	0.9405

Compare expression of checked genes

Lus10023722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.