Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60000 255 / 5e-84 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 154 / 2e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52380 149 / 3e-42 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G50250 147 / 5e-42 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 144 / 3e-40 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G52150 137 / 1e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 103 / 4e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G01080 102 / 4e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G53460 90 / 5e-20 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT5G19350 84 / 6e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014470 [exp] 203 / 3e-64 AT1G60000 130 / 5e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002222 [exp] 183 / 1e-55 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 183 / 2e-55 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 159 / 1e-46 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 152 / 2e-43 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 147 / 2e-41 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10013801 [exp] 140 / 2e-37 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10017962 [exp] 133 / 3e-36 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10041952 [exp] 132 / 1e-35 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172100 [exp] 282 / 2e-94 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 271 / 5e-90 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G090700 [exp] 164 / 2e-48 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 147 / 2e-41 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 143 / 5e-40 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G202000 [exp] 142 / 2e-39 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 140 / 6e-39 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.001G340800 [exp] 139 / 6e-39 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G127200 [exp] 138 / 2e-38 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G065900 [exp] 132 / 2e-36 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10023723 pacid=23148274 polypeptide=Lus10023723 locus=Lus10023723.g ID=Lus10023723.BGIv1.0 annot-version=v1.0 ATGGCAGCAATTGGTGCAGCTGCCATAAGTTCATCTTTCTCCCCATCCATCAATAATACCCTCAATTGCACCCAAAACAATAGGCTGATTTTGCACAATC CTTTATTTCCATCCTCAGATTCTTCCTTTAGAGTTCCAATTTCAGCTCGTTTATCTCTAGGCAGTCCAGACCATTTCCCCATTGCTGCTTCCACATGGCG CCCTGCAAAGTTATACGCCCCCGCCGTTGCTCAGGACCAGACAGAGACGGAGACGGTTGGAGTAGCAGAGACAGAGACGGAGACGGTTGGAGTAGCAGAG ACAGAGACGGAGACGGAGACAGAGACAGTGGAAGTAGCAGAGAGGGAGACGGAGACACTGGAAGTAGCAGAGACGGAGACGGAGACACTGGAAGTAGCAG AGACGGAGACAGAGACGGAGACGGTAGGAGTAGCAGAGACAGCTTCAGCTACTACTCTAGCTGAGGGAGAGCAAAAGGTTGAAGAAGGCAGCAGTGGTGT TAGTACGAAGCTGTACATTGGGAATTTGCCCTTTAACGTGGATAGTGCGGAGCTTGCTGGGGTCATTCAGGACCATGGCAGTCCTGAACTTATTGAGGTT CTGTACAACAGGGTAACTGGGAAAAGCAGAGGATTTGCCTTCGTCACAATGAGCAGCATTGAGGATTGCGATTCAGTGATTCAAAATCTGGACGGCAAAG AATATCAAGGTCGGATACTGAGGGTGAACATGGCAGACAAGCCCCGAGCAAGAGACCGTATGTACCCGGATACAGAACACAAGCTGTTTGTTGGGAACAT ATCATGGTCAGTCACGTCCGAGAGCTTAACAGAAGCATTTAGACCTTATGGGGAAGTGGCTTATGCAAGAGTTTTGTTTGATGGTGAGACTGGAAAGTCT CGTGGGTACGGATTCGTTTGCTTCAACACTGCATCAGATATGGAAGCAGCTCTCCAAGCTGCTGATGGACTGGAACTAGAGGGCAGGTCCCTAAGGGTCA GCCTGGCAGAAGGAGGGAAGAAATCATGA
AA sequence Show only first row Show all	>Lus10023723 pacid=23148274 polypeptide=Lus10023723 locus=Lus10023723.g ID=Lus10023723.BGIv1.0 annot-version=v1.0 MAAIGAAAISSSFSPSINNTLNCTQNNRLILHNPLFPSSDSSFRVPISARLSLGSPDHFPIAASTWRPAKLYAPAVAQDQTETETVGVAETETETVGVAE TETETETETVEVAERETETLEVAETETETLEVAETETETETVGVAETASATTLAEGEQKVEEGSSGVSTKLYIGNLPFNVDSAELAGVIQDHGSPELIEV LYNRVTGKSRGFAFVTMSSIEDCDSVIQNLDGKEYQGRILRVNMADKPRARDRMYPDTEHKLFVGNISWSVTSESLTEAFRPYGEVAYARVLFDGETGKS RGYGFVCFNTASDMEAALQAADGLELEGRSLRVSLAEGGKKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	0	1
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	1.4	0.9611
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	2.4	0.9568
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	3.5	0.9413
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	5.2	0.9449
AT3G46630			Protein of unknown function (D...		Lus10024797 [exp]	5.5	0.9290
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	5.9	0.9358
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	6.9	0.9272
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	6.9	0.9171
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	7.3	0.9218
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	7.7	0.9355

Compare expression of checked genes

Lus10023723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.