Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21865 46 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014471 [exp] 338 / 2e-119 AT4G21865 47 / 1e-06 unknown protein Lus10000264 [exp] 42 / 0.0002 AT4G21865 42 / 8e-05 unknown protein Lus10024951 [exp] 42 / 0.0002 ND 37 / 0.004 Lus10022875 [exp] 42 / 0.0002 ND 37 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172000 [exp] 117 / 3e-33 AT4G21865 59 / 2e-11 unknown protein Potri.010G065666 [exp] 107 / 1e-28 AT4G21865 50 / 8e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023724 pacid=23148236 polypeptide=Lus10023724 locus=Lus10023724.g ID=Lus10023724.BGIv1.0 annot-version=v1.0 ATGATTTGTTTCTGTTTTCTGTACCTACTAGTGTATCCGAAGGTGAAGGTTAGGAGAGAAGATGAAGGTGAAGATGATCGACACTGGGGTTCCTTGCTTT CTTTGAAGGATATCCAGTTCCTCACCATTCAGGAAACCCGTTTTCCAGTTAAACAGCTACAAGATATTGCAGTTAAGCGCCGGCAAGATGCTTCACCATC TCCCAGTCCCAAGGCCAAAATTCCCAAGTATTATGTGCCCAGCTTGATCCTGCCACAGCTGCATGAAACACCAACAACTCCAGTCTCAGTTTCTGCAGAA AGTTCAGGAACAGACACCAAAAGCAATCCTGATGAAGGAGAGGATAGACCACTTATTCGAGCCAGTTCAGTTCCACCACCGAGAGCTGTATTATCTAGTC CTCAAAATGATGCAATGATTGGAAACAAGAACCGAGTGGCCAAACCAGCCACCAGGCCTTCTGCTCTGAGGAATAAGAATTTGATTCAAGAGAGAAATGT CCAACACTGTAAAGTCACTCCGAAAACAGCCGTTGATGACACTATAGTACGGAATAGAAATTCGAAAGATCAGCTTCCTGCTGACAAGGGTGATCAGAAA GGGAAGATAGGGTCATCATCAACAGCAATTTCTAGTCGTAGAAGACCTGTAGTGGAGTGGATAAACTGA
AA sequence Show only first row Show all	>Lus10023724 pacid=23148236 polypeptide=Lus10023724 locus=Lus10023724.g ID=Lus10023724.BGIv1.0 annot-version=v1.0 MICFCFLYLLVYPKVKVRREDEGEDDRHWGSLLSLKDIQFLTIQETRFPVKQLQDIAVKRRQDASPSPSPKAKIPKYYVPSLILPQLHETPTTPVSVSAE SSGTDTKSNPDEGEDRPLIRASSVPPPRAVLSSPQNDAMIGNKNRVAKPATRPSALRNKNLIQERNVQHCKVTPKTAVDDTIVRNRNSKDQLPADKGDQK GKIGSSSTAISSRRRPVVEWIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21865			unknown protein		Lus10023724 [exp]	0	1
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	1.0	0.8902
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	1.4	0.8845
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10021386 [exp]	2.4	0.8784
					Lus10018550 [exp]	5.5	0.8413
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	7.1	0.8406
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	8.5	0.8447
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	8.5	0.8311
AT4G21865			unknown protein		Lus10014471 [exp]	9.5	0.8651
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	10.5	0.8495
AT1G72460			Leucine-rich repeat protein ki...		Lus10008128 [exp]	11.0	0.8588

Compare expression of checked genes

Lus10023724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.