Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13330 421 / 2e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014472 [exp] 833 / 0 AT4G13330 441 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171900 [exp] 523 / 0 AT4G13330 421 / 3e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023725 pacid=23148324 polypeptide=Lus10023725 locus=Lus10023725.g ID=Lus10023725.BGIv1.0 annot-version=v1.0 ATGTGGTGGCGCAGAGCTGGACTAAGCTTTGGACGGAATGTTGTTCACAACCGGCGACGGTTCTGCACTGTAACCCGTCGTCAGATTGAGGATGAGGGTG ACTGGTTTTATTCGTCAGAATGGTGGGGGACGGATTCCGATGGCCACACCGTTCTGCGCGCCGATTCCAGTCATGGGAATGGCGTTGTTTCAGTGCTAGC CTATCCTTCTTCTAGACCTGTTCAGGCTGAATGGCCAAAAATTGAGAAATGGCTGCAGGAAAGATACGCGTTTGTGCATCCAAGTCATAATCAACACAAT GGTCGTTTCAAGATACTTGGATATCAATGGCGGACGCTCCATTTTAATGATACTACACGCCAGAGCACTGCTAAAGTAATGACTGCTTACCACCAGTCAC AGCCTGGCTCTCTGTTCTTGTTCCAGCAGCCACATTGTTTAGCAGTTCCATATTTAAAGAGTATGGCAGCCGCAGGTTTGACTGCTATAGCGAGCTGTGG TTTCGACCTTGCTGGTGTTGCCTATGGAAAGAAGAAGATGCGTGTTCTATGCATAGGTCATGGTGGAGGGAGTTTGCCCTTGTTCTTAGCAAGCAAACTG CAAGGTGCCATAATTGATATTGTCGAGATCGATCCTGTCGTTATATCCACATCGGTCCAAGCAATGGGGTTCCCAGCTTTCTCTCTAATGAACCCATCTG GACAACGTGCGACGCCAAACCCCACTGGCATGGATCTCGTCATGTGGAAAGGCATCCACGAAAGGCTCCACCTTTACGAAGCAGATGCAGAGAAGTTCAT CCTGAACACCAGCAAAACCACTTACGACATGGTCTTTATTGATGCTTATGATGGCGACGACATCTTTCCTCGCAACCTATGGGATCCAGACTCCTCGTTT CTGAAAGCTCTCAGTCAACACCTGCACTGGGACCATGGCACCGTGGTGGTGAACCTTCACTCTTCCGACCCCTGCGATTCAAATTTGTCTTCCAACTCGT ATTTCGTAGATCAAGTTCTGCCGATGGCCCGGCACGTGTCCAGTGCTTGCAGAGCATACAGAGACGTCATAGTAGGGAATGGGGAAGGTGCAGCTTTCAC TGTCTCGGTTCCGTGGGTTTGTAATATGAGTCTAGTTGTTTCCAGAGGTCTGAAGACTGATGCTAATAGCAGCAGCAGTAGAGATGGAGTCTTAGAAGCT CTGCTGTCAAGATCGTTTGAAGTTGAGAAGGCTGCAAACCTTCCCTTTTCATGCGTGGAGTATATAAAGAGAGACTTTGAGCTCGTTACTTGA
AA sequence Show only first row Show all	>Lus10023725 pacid=23148324 polypeptide=Lus10023725 locus=Lus10023725.g ID=Lus10023725.BGIv1.0 annot-version=v1.0 MWWRRAGLSFGRNVVHNRRRFCTVTRRQIEDEGDWFYSSEWWGTDSDGHTVLRADSSHGNGVVSVLAYPSSRPVQAEWPKIEKWLQERYAFVHPSHNQHN GRFKILGYQWRTLHFNDTTRQSTAKVMTAYHQSQPGSLFLFQQPHCLAVPYLKSMAAAGLTAIASCGFDLAGVAYGKKKMRVLCIGHGGGSLPLFLASKL QGAIIDIVEIDPVVISTSVQAMGFPAFSLMNPSGQRATPNPTGMDLVMWKGIHERLHLYEADAEKFILNTSKTTYDMVFIDAYDGDDIFPRNLWDPDSSF LKALSQHLHWDHGTVVVNLHSSDPCDSNLSSNSYFVDQVLPMARHVSSACRAYRDVIVGNGEGAAFTVSVPWVCNMSLVVSRGLKTDANSSSSRDGVLEA LLSRSFEVEKAANLPFSCVEYIKRDFELVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13330			S-adenosyl-L-methionine-depend...		Lus10023725 [exp]	0	1
AT4G28300			Protein of unknown function (D...		Lus10018593 [exp]	11.5	0.6796
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	11.8	0.6873
AT4G28300			Protein of unknown function (D...		Lus10039827 [exp]	12.7	0.6825
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10003548 [exp]	13.6	0.6441
AT3G57500			unknown protein		Lus10012197 [exp]	33.9	0.6100
AT1G65560			Zinc-binding dehydrogenase fam...		Lus10040589 [exp]	59.9	0.6167
AT4G03420			Protein of unknown function (D...		Lus10031632 [exp]	62.9	0.5935
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019836 [exp]	63.2	0.5862
AT1G63610			unknown protein		Lus10030753 [exp]	71.5	0.5968
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	77.9	0.5930

Compare expression of checked genes

Lus10023725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.