Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04520 326 / 1e-111 PDLP2 plasmodesmata-located protein 2 (.1) AT2G33330 315 / 2e-107 PDLP3 plasmodesmata-located protein 3 (.1) AT5G43980 206 / 2e-64 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT3G04370 129 / 8e-35 PDLP4 plasmodesmata-located protein 4 (.1.2) AT5G37660 91 / 1e-20 PDLP7 plasmodesmata-located protein 7 (.1.2) AT2G01660 84 / 1e-18 PDLP6 plasmodesmata-located protein 6 (.1.2) AT1G70690 79 / 1e-16 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 73 / 1e-14 PDLP8 plasmodesmata-located protein 8 (.1) AT5G48540 55 / 2e-08 receptor-like protein kinase-related family protein (.1) AT4G04510 54 / 1e-07 CRK38 cysteine-rich RLK (RECEPTOR-like protein kinase) 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014475 [exp] 436 / 4e-155 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10001052 [exp] 186 / 7e-57 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10020814 [exp] 92 / 3e-21 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10001418 [exp] 88 / 2e-20 AT5G43980 122 / 9e-34 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10027953 [exp] 77 / 1e-15 AT3G04370 86 / 7e-19 plasmodesmata-located protein 4 (.1.2) Lus10010362 [exp] 72 / 7e-14 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10016710 [exp] 71 / 2e-13 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10038227 [exp] 62 / 7e-11 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10025875 [exp] 60 / 4e-10 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171700 [exp] 363 / 2e-126 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 355 / 2e-123 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.002G257300 [exp] 250 / 1e-81 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.013G048200 [exp] 187 / 1e-57 AT1G04520 214 / 3e-68 plasmodesmata-located protein 2 (.1) Potri.014G067000 [exp] 87 / 2e-19 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.008G133500 [exp] 85 / 1e-18 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.010G108100 [exp] 81 / 2e-17 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.004G086000 [exp] 81 / 4e-17 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.017G130800 [exp] 76 / 1e-15 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.002G145400 [exp] 58 / 2e-09 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10023726 pacid=23148256 polypeptide=Lus10023726 locus=Lus10023726.g ID=Lus10023726.BGIv1.0 annot-version=v1.0 ATGGGTTTTCCTTCAAAACCACCTTCAATCACTCTTCTCTTCATCCTCCTCCTCATTTCCCTAACAAATCCCATCCAGTCGGCGCCGGAGTACTCCTCAC TGGTCTACAAAGGCTGTGCAAAACAGGCATTCCAAGATCCAACAGGTCTCTACTCACAAGCCCTCTCAGCACTTTTCGGCACCTTAGTCCAACAATCCAC CAAAACCAAGTTCTTCAAGACCACAACGGGGACTGGCCAAACCACCATCACCGGACTCTTCCAGTGCAGGGGAGACCTCGCCCCCGGCGACTGCTACAAA TGCGTCAGCGGCCTTCCTGTCCTCACCGACAAAATGTGCGGCAAGGCGATTGCTGCTCGTGTCCAGCTCTTCGGATGCTACATCCTGTACGAGGTCGCCG GTTTCACACAGGTCTCCGGGATGGAGATGCTGTTCAAGAGCTGTGGTCGCTCCACCTCCGCCGGAAGTGGGTTTGAGGAGAAGAGGGACACTGCCTTCTC AGTGCTGGCTAATGGAGTGGCGAGCGGGCATGGATTCTACACCACCAGCTACCAGTCGATGTATGTGTTGGGACAGTGCGAGGGAGATGTTGGGGATTCG GATTGTGGAGAGTGTGTCAAGAACGCCGTCCAGAGAGCTCAGGTTGAGTGTGGGAATGCCATGTCTGGTCAAATTTATCTCCACAAGTGCTTTATTAGTT ACAGTTACTACCCTAATGGAGCTCCCAAGAGATCGTCTTCTTCTTCATCTTATGCCTCCCCTTCATCAGGAGGGTCAGGAGGAGGGCAAAACACAGGGAA AACAGTGGCTATAATTGTAGGAGGAGCAGCAGGAGTGGGGTTTCTGGTGATTTTCTTGTTGTTTGCAAGAAATCTGATGAAGAAGCATGATGGTATGTCT ATGTTAAATGTTATGAATGATGAACTTTTCCAACGACACAATGAGATCTATCTCTCTCTATCTTTGTTTGCTTTTTCTTGA
AA sequence Show only first row Show all	>Lus10023726 pacid=23148256 polypeptide=Lus10023726 locus=Lus10023726.g ID=Lus10023726.BGIv1.0 annot-version=v1.0 MGFPSKPPSITLLFILLLISLTNPIQSAPEYSSLVYKGCAKQAFQDPTGLYSQALSALFGTLVQQSTKTKFFKTTTGTGQTTITGLFQCRGDLAPGDCYK CVSGLPVLTDKMCGKAIAARVQLFGCYILYEVAGFTQVSGMEMLFKSCGRSTSAGSGFEEKRDTAFSVLANGVASGHGFYTTSYQSMYVLGQCEGDVGDS DCGECVKNAVQRAQVECGNAMSGQIYLHKCFISYSYYPNGAPKRSSSSSSYASPSSGGSGGGQNTGKTVAIIVGGAAGVGFLVIFLLFARNLMKKHDGMS MLNVMNDELFQRHNEIYLSLSLFAFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10023726 [exp]	0	1
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	1.4	0.8687
AT3G52610			unknown protein		Lus10022699 [exp]	5.7	0.8053
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	9.3	0.8575
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	10.9	0.8158
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	14.6	0.8339
AT5G14230			unknown protein		Lus10041588 [exp]	14.9	0.7611
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	15.7	0.8149
AT5G48760			Ribosomal protein L13 family p...		Lus10016679 [exp]	17.9	0.8336
AT3G21400			unknown protein		Lus10006520 [exp]	18.2	0.8131
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10021430 [exp]	18.8	0.8315

Compare expression of checked genes

Lus10023726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.