Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04500 270 / 6e-83 CCT motif family protein (.1) AT2G05590 251 / 5e-77 TLD-domain containing nucleolar protein (.1.2) AT2G33350 226 / 2e-66 CCT motif family protein (.1.2) AT4G39870 152 / 6e-40 TLD-domain containing nucleolar protein (.1.2) AT1G63820 98 / 4e-22 CCT motif family protein (.1) AT5G41380 94 / 1e-20 CCT motif family protein (.1) AT3G12890 88 / 4e-19 ASML2 activator of spomin::LUC2 (.1) AT4G27900 72 / 8e-14 CCT motif family protein (.1.2) AT5G53420 68 / 7e-13 CCT motif family protein (.1.2.3) AT5G59990 65 / 2e-11 CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014476 [exp] 560 / 0 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2) Lus10014478 [exp] 409 / 3e-139 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10041697 [exp] 146 / 4e-38 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2) Lus10024053 [exp] 144 / 4e-35 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10032288 [exp] 92 / 9e-20 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10024655 [exp] 92 / 1e-19 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10031770 [exp] 83 / 7e-17 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1) Lus10031192 [exp] 82 / 1e-16 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1) Lus10028137 [exp] 75 / 2e-14 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065900 [exp] 324 / 1e-104 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2) Potri.008G171500 [exp] 324 / 2e-103 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.010G066100 [exp] 307 / 2e-96 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.005G075800 [exp] 164 / 3e-44 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2) Potri.007G092700 [exp] 162 / 1e-43 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2) Potri.001G101200 [exp] 111 / 2e-26 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.003G130500 [exp] 110 / 4e-26 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.005G097700 [exp] 88 / 6e-19 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1) Potri.001G233600 [exp] 84 / 6e-18 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.007G066800 [exp] 84 / 2e-17 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0281 [flax] [poplar] PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10023727 pacid=23148330 polypeptide=Lus10023727 locus=Lus10023727.g ID=Lus10023727.BGIv1.0 annot-version=v1.0 ATGATCGCATTTAAGGACAAGGTTTCTAATCAGCTGTCTCGTTTATTTGCCGATTCACCCAAATCGCCTTCTTCTGATTTACACCCCTCGCGTCCTTCTC ATAATTCTCAGGGCAGGACAGGTACTCAAGGCGAGAGGTCATATTCGTCATATTTCTCATTTGTGTCTCCTACATTGGGCTTTGGTAAGTCTGATTCACA AAATGGTAAGGAGCAGAGAATTGAGTTAGCACCAGCTCCATCCCTTCCACTAAGATGGAGAGGTAGAGAGTTTGACCAGGAAGAGGAATTGAGATACCAT GAATGCAAGAATCAGGTACGCCAGAGAGCTGGTGAAGGTGCAAAAGTATCTAGAGAAGCTTTTGATAAGAAACAAACAGGCATATCTCCTCATGACGATG TCGATTGTTATTCTCAAACCAGCAGCAGCGACAGTGATGTTTTTGAAGAAGCATCAGAGAAACAGACAACCAGAATACCGTTTCTCAAAGACGAGTCGAC TTTCATATCATCTGAGTTGTTTGAGTTCCTGATGTCATCCCTCCCTAACAGTGTCAAGGGGAATGAATGGGTTTTGATGTATAGTACGTTGAAGCATGGC ATATCTCTCCGTACGCTTATTCGCAAGAGCGCTGACCTTTCCGGCCCGTGTTTACTGATTGCTGGAGACAGACAAGGTGCTATTTTCGGGGGACTTCTGG ATTGTCCATTGAGAGCCACTTCGAAGAGGAAATATCAAGGGACAAACCAGTCGTTTGTATTTACGACAATATATGGTGCTCCAAGGCTGTTTCGCCCAAC AGGTGCCAACCGATATTACTGCTTGTGTTTAGAGGACTTATTAGCACTAGGTGGTGGTGGAAACTTCGCCTTATGCTTGGATGAGGACCTGTTACATGGA ACTAGCGGTCCCTGCGAAACATTTGGGAATTTATGTCTGGCGCACAATTCAGAGTTCGAGTTAAGACATGTGGAGGAGGAGGTTTCGAGCCCGATGAATG CTCAGATGTTGGAGTTTTGTGATTCTGATTTCTTCCAAGAAACAATGCAGAACAACAACAACAACAACAACAACTCAGAAGTCACATCTAGCTCCAACTG CTGCTACGACGACAACTCTCCTTACAACACAAACAACCTTCCATTTCCTAATGATTTGAACAACAACAACACATGCCAGGATAACAACAATCATCCCAAC ACAAACACAGCCACTAACAGTACTAACAACAACCAGAAAAAAACTCCAACGACCAGTAGCACAACCACAGCCACAGCAGCCAACCTAAGCAACACCAACA GCAGCAACCTGTCATCGATTCTATTCGAGTCGCAGGATGAGCTAGACAACGACATCTCTGCCTCGATCGACTTCTCATCTTCCCCTGCCATCTCTGTTCC TAACCTCTTCAACCACCAATTCGACTTCACATCTATCCAGCCACACCTTCCATTCTCTGATCATCACGTTAATGGCGGATTCTCATCCAACTACTACTCA ACATCACCAGCAATTGATCAGCAGGCTGCTCTAGTCCCACAATTTATGCTCCCTAATTCCTTACTCAACTCGGTCTTGGAAGAAGATTGCTTTTCCTCTG TCCCTAACTCCTCATCATCTTATGCTCCACACCTCAACCCTTCCTCCCCTTCTTGCTCGTACCTTGGCCCCGCCGCCCCTTCCATGACCACTTTCATGCC TATGAATGCTGTACTGTCGTCAGCAGATTGCTCCGCAGTTTTCGGTGGAGGGTTCTATACTACTACTACTACTACTACTACTACTGCTGCTGCTGATCAG TTCCAGCCTCAGGATCAGACGGATTACCAAGGTGACAATGGTGGAATTTACTGCCCAGCTGACTCTCTACAGCGTGCTTTTAACCCATCAGACCTTGAGG TGTTCAACAATGAAACAAAGCAAATAGTTGGTGGAGGAACAACGAGCTGTCCACCGTTGACAACAGAGTTGACCAATCTGGAAGATTCGAGTTTCAAAGT AGGGAAGCTATCGGTTGAGCAGAGGAAGGAGAAGATTCATAGGTACATGAAGAAGAGGAATGAAAGGAACTTCAGCAAGAAAATCAAGCAGTATGCTTGC AGGAAGACACTTGCAGACAGCAGGCCTAGAGTGAGAGGAAGATTTGCAAAGAACGATGATTTTGGAGAGAGCAATAGAGCTGCTAGCAGTAACCATGAGG AGGATGACGATGGTGATCAGGTAGCAGTGAAAGAAGAAGAACAGATGGTGAATTCTGCTGATATATTTGCACATATCAGTGGGGTGAACTCCTTCAAATG CAACTACTCCATTCAATCATGGATCTAA
AA sequence Show only first row Show all	>Lus10023727 pacid=23148330 polypeptide=Lus10023727 locus=Lus10023727.g ID=Lus10023727.BGIv1.0 annot-version=v1.0 MIAFKDKVSNQLSRLFADSPKSPSSDLHPSRPSHNSQGRTGTQGERSYSSYFSFVSPTLGFGKSDSQNGKEQRIELAPAPSLPLRWRGREFDQEEELRYH ECKNQVRQRAGEGAKVSREAFDKKQTGISPHDDVDCYSQTSSSDSDVFEEASEKQTTRIPFLKDESTFISSELFEFLMSSLPNSVKGNEWVLMYSTLKHG ISLRTLIRKSADLSGPCLLIAGDRQGAIFGGLLDCPLRATSKRKYQGTNQSFVFTTIYGAPRLFRPTGANRYYCLCLEDLLALGGGGNFALCLDEDLLHG TSGPCETFGNLCLAHNSEFELRHVEEEVSSPMNAQMLEFCDSDFFQETMQNNNNNNNNSEVTSSSNCCYDDNSPYNTNNLPFPNDLNNNNTCQDNNNHPN TNTATNSTNNNQKKTPTTSSTTTATAANLSNTNSSNLSSILFESQDELDNDISASIDFSSSPAISVPNLFNHQFDFTSIQPHLPFSDHHVNGGFSSNYYS TSPAIDQQAALVPQFMLPNSLLNSVLEEDCFSSVPNSSSSYAPHLNPSSPSCSYLGPAAPSMTTFMPMNAVLSSADCSAVFGGGFYTTTTTTTTTAAADQ FQPQDQTDYQGDNGGIYCPADSLQRAFNPSDLEVFNNETKQIVGGGTTSCPPLTTELTNLEDSSFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKQYAC RKTLADSRPRVRGRFAKNDDFGESNRAASSNHEEDDDGDQVAVKEEEQMVNSADIFAHISGVNSFKCNYSIQSWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	0	1
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	1.0	0.8727
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10040437 [exp]	1.7	0.8320
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	3.7	0.8103
AT2G45670			calcineurin B subunit-related ...		Lus10015853 [exp]	6.1	0.7768
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	6.5	0.8399
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	9.5	0.8124
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	10.4	0.8311
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	13.9	0.7683
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	14.1	0.7887
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	16.0	0.8249

Compare expression of checked genes

Lus10023727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.