Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33340 772 / 0 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 769 / 0 MAC3A MOS4-associated complex 3A (.1.2) AT2G41500 100 / 7e-22 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G49660 93 / 2e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 84 / 3e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 85 / 5e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 81 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G50230 77 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 75 / 2e-14 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 77 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014477 [exp] 1014 / 0 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10021059 [exp] 123 / 2e-29 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 122 / 2e-29 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 88 / 1e-18 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 84 / 3e-17 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 83 / 3e-16 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 80 / 4e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 79 / 8e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 79 / 4e-15 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171600 [exp] 855 / 0 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 848 / 0 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.006G045800 [exp] 124 / 6e-30 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 92 / 4e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 84 / 1e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 83 / 2e-16 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 82 / 4e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 80 / 2e-15 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 77 / 3e-15 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 77 / 1e-14 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0229 [flax] [poplar] RING PF11789 [flax] [poplar] zf-Nse Zinc-finger of the MIZ type in Nse subunit CL0229 [flax] [poplar] PF08606 [flax] [poplar] Prp19 Prp19/Pso4-like
Representative CDS sequence Show only first row Show all	>Lus10023728 pacid=23148316 polypeptide=Lus10023728 locus=Lus10023728.g ID=Lus10023728.BGIv1.0 annot-version=v1.0 ATGGAAGGCGGGGTCGTTTGTTCCTCCTTTCTATGTCTATTAGAGTTCTTCGCGGCGTCCTCTCTGCCTTTTGCGCTCTTGATTTACTCGTGTTCCTGCT CTTCACTGTTGATTTCGCCGCCGTTCCTCCTCGACCTCTGCTCATTTCTCCGTGCTGCTGTTTGCCCCGCCGGAGGAATCCTACCTATCTTCGCAATGCA GTGCGCAATCTCCGGCGACGTGCCAGTAGAGCCCGTCGTTAACGCCAAGTCTGGGCTTGTCTACGAGAAACGCCTAATCGAGAGGTTCATAAATGATTCT GGAAAATGCCCCGTTACTGGGGAGACTCTTACTGCTGATGACATAATTCCAATTAAAATGGGCAAGATTGTGAAGCCAAGAACTGTTCAGACAGCTAGTA TCCCTGGAATGCTTGGCATGTTCCAAAATGAATGGGATGGTCTCATGTTATCCAATTTTGCTTTGGAACAACAACTACATACTGCAAGGCAGGAGCTCAG TCATGCACTTTACCAGCATGATGCTGCTTGCCGCGTAATTGCAAGACTTAAAAAGGAAAGAGACGAATCGAGAGCATTGCTTGCACAGGCAGAGAGACAG ATACCTATGTCAACTGCAGTAACTGTTGCAGCTAATGCTAATGGGAATAGAGAAGCTGAGGCTAATGATTTGGCTCCTGCCGCGATGAAGATGCGTCCAG GGATTTCACTAGACTTAGTTGCCGAGTTAACAGAGTGCAATGCTGCTCTTTCACAGCAACGTAAAAAGCGACAGATTCCTTCAACCTTGGCATCTATTGA AGAGCTGGGGAGGTACACTCAACTATCAAGTCATCCACTTCAAAAGACAAACAAACCAGGAATTTCATCCATTGACATCCTGTATTCCAAGGACATTATT GCCACTGGAGGAGTTGATTCTACAGCTGTACTTTTTGATCGTGCATCAGGACAAATCCGATCAACACTCAGTGGTCACTCAAAGAAGGTTACCAGTGTAA AATTTGTGGCTGATGGTGGCCTGTTCTTGACAGGATCTGCTGATAAGACCGTTCGTGTTTGGCAAGAATCTGAAGAAGGCAGCTATGATTGCAGACAGAT TTTGCGGGATCATAAGGCTGAGGTTCAAGCTGTCACTGTGCATGCTACGAATAAGTATTTTGTGACTGCTTCCCTCGATAATACATGGTGCTTCTATGAT CTTTCCTCAGGTTTATGCCTAGCACAGGTTGATGCAGTTGGAGACACATCCAATTCTGAAGGGTACACGGCTGCTGCCTTCCATCCTGATGGTCTCATCC TTGGTACTGGCACTTTTGAAGCTTCTGTCAATATCTGGGATGTCAAAGTCCAGAAAAATGTTGCCAAATTCGAAGGACATGTTGGGCCTGTAACTGCAAT ATCTTTCTCGGAAAATGGTTACTTCCTTGCTACTGCTGCCGGTGATGGCGTGAAGCTTTGGGATTTGCGTAAATTGAGGAACTTTAAGACTCTTAATCTT TATGATGCGGATACCCCAACCAACTCTGTTGCGTTTGACCATAGTGGTTCTTACTTGGGAGTTGCAGGCTCGGACATAAGAGTGTTCCAAGTGGCTAGTG TGAAAGCAGACTGGAACTGCATCAAAACCCTTCCTGATTTATCCGGAACAGGGAAAGCAACTTGTGTGAGGTTTGGAATGGATGCAAAATATTTAGCTGT GGGATCAATGGATCGTAATCTGAGAATATTTGGGCTGCCTGCTGAGGATGATGCAGCCATGGAAGAATCATAG
AA sequence Show only first row Show all	>Lus10023728 pacid=23148316 polypeptide=Lus10023728 locus=Lus10023728.g ID=Lus10023728.BGIv1.0 annot-version=v1.0 MEGGVVCSSFLCLLEFFAASSLPFALLIYSCSCSSLLISPPFLLDLCSFLRAAVCPAGGILPIFAMQCAISGDVPVEPVVNAKSGLVYEKRLIERFINDS GKCPVTGETLTADDIIPIKMGKIVKPRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRALLAQAERQ IPMSTAVTVAANANGNREAEANDLAPAAMKMRPGISLDLVAELTECNAALSQQRKKRQIPSTLASIEELGRYTQLSSHPLQKTNKPGISSIDILYSKDII ATGGVDSTAVLFDRASGQIRSTLSGHSKKVTSVKFVADGGLFLTGSADKTVRVWQESEEGSYDCRQILRDHKAEVQAVTVHATNKYFVTASLDNTWCFYD LSSGLCLAQVDAVGDTSNSEGYTAAAFHPDGLILGTGTFEASVNIWDVKVQKNVAKFEGHVGPVTAISFSENGYFLATAAGDGVKLWDLRKLRNFKTLNL YDADTPTNSVAFDHSGSYLGVAGSDIRVFQVASVKADWNCIKTLPDLSGTGKATCVRFGMDAKYLAVGSMDRNLRIFGLPAEDDAAMEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	0	1
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	2.8	0.9441
AT4G28200			unknown protein		Lus10003351 [exp]	3.2	0.9421
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	3.3	0.9476
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	4.6	0.9446
AT1G07970			unknown protein		Lus10023345 [exp]	6.7	0.9338
AT2G04235			unknown protein		Lus10016054 [exp]	8.1	0.9452
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	8.9	0.9286
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	11.2	0.9301
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	11.9	0.9032
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	14.7	0.9193

Compare expression of checked genes

Lus10023728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.