Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33360 308 / 8e-97 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G04490 188 / 2e-53 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT4G11450 80 / 2e-15 Protein of unknown function (DUF3527) (.1) AT1G63520 71 / 2e-12 Protein of unknown function (DUF3527) (.1) AT2G29510 57 / 3e-08 Protein of unknown function (DUF3527) (.1) AT2G37930 50 / 2e-06 Protein of unknown function (DUF3527) (.1) AT5G59020 48 / 2e-05 Protein of unknown function (DUF3527) (.1) AT5G01030 47 / 5e-05 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014479 [exp] 941 / 0 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10002006 [exp] 66 / 6e-11 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10035493 [exp] 64 / 2e-10 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10021110 [exp] 56 / 1e-07 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10016455 [exp] 55 / 2e-07 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10017200 [exp] 55 / 2e-07 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10040721 [exp] 54 / 4e-07 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171400 [exp] 561 / 0 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.010G066200 [exp] 555 / 0 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.003G127500 [exp] 72 / 9e-13 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.001G104200 [exp] 67 / 3e-11 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 59 / 7e-09 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.009G039300 [exp] 59 / 7e-09 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10023729 pacid=23148367 polypeptide=Lus10023729 locus=Lus10023729.g ID=Lus10023729.BGIv1.0 annot-version=v1.0 ATGGAAACTACAATTCCAGATGCACAGAACCTTAGCCGGAGTGGAAATGATTCATTGGAAGACTTTTGTGATGGAAAGGAATCATCAAGAGATACAACTG GACTTGCTAATCCAGAATCAAAATCAAGGATGAGAAGGATTAATTCCAAGAACCACTCCATCATTTCCAAAGTCAAACAGCTGCAGAAAAGTAAGACATG GATTAATGGTTCATTCCTGCATAGAATTGAAATCATTGATGATTGGATTCCGAAGCATATGGTGACAGTGGATGAGAAATATCTCCGCCGTTGCCTCCAT TTGATTAATGTCGGTGCTTCCTGGACATCTTCTTGCAGTGTTTCTATTGATTCATCATTGGGAAGCCTGGATGTCTGGCCTAATGGTTTCAGTCCTGTAA AAGTTGGTAGTGAGTACATTAATGACATTACCAGGTTTGATCTCAACTGTACTACATTAGAAACTGGAAATGGCAGCTTGGTTGCTGGCCCTGCAGGCGA TTGGATTATTGGTTCAATCATGGGTAGCAAGAGTATGGTTAATATACTGCAAAGTCCTTTATTGCGTGAGTATGGTAACATCGAAGAGTCCAATTCAAAG AGTACAGGGTCGATTTCTCATGAGCTAATGAACTTTCCTGGTGGGTTGAGTAGTTATTCATCGTTCAAGCCAGACATGGAGACCAGGTTACCAATAAACT ACAGAAATGTATCAGAGACTTCACATGAAAGGCTCTTTTCTGTATCAAGTACAAACTCTACATTTTCCGACCAGTCGTCTTCTCTATCTTCCTCTGCGGC TCTATCTCAGGGGATGCTTCAGTTCACATGGAAGGGCGGGAATCCGCATTTCGTTTTGTCTCTGGATGATCAAAAGTTGGTCTATGTTGCCAACTTGTGG AAGACCGAGTCAAGGGATGGTAGCAGTCTTGACTATACGTACTTGTTTCACTCCAGTAAAATTCATGAACATGATTCTCATCTTGTTGGTAAGATGGTGG TGTCAACTTCTTTTACCCTTTCTGAGAACAATTCAAAAACCATGGTTAGGGAGTTTGTTCTGTTTGGTGGGAATGGGAGTTTTGTGGATATGCAATCTTC AAACCATGAACTCAGAAAGGATAGGAGATTGTCCAGGAAGGTGACTCAAGTGTTTCGGAAGAAGAGAAGTTTGTCTAAATTTGGCGGATCAGGTACCATA CTGGAAAACAGTGCTTGGGGGCCATCCCAGGATAATGATTATTGTGTTGATTCAGTTGGTGGTTGTGATCTGTTGGAAAGGGATCTTCCTTCAAACTATG AATCGACTGCCATTGTTGTGAAAGAACATATCCCTCAAATCTGTCAAGAGAAAGTAGGAGGCTGGGGTTTAAAATTCCTCCAGAAAGCAAGTGACAAGCA ACATACTGGCGATGTAGGAGCTTGCAGTGACTGCTCAACAAGCATGGATATAATACTTCCAGCGGGTTTACATGGCGGTCCAAGAACAAGAAATGGTGGT CCTGCTAGTCTTATAGAAAGATGGAAATCCGGTGGATGCTGCGATTGTGGAGGATGGGACTTGGGGTGCCCATTAACAGTACTCAAAGGCAGGTCGAGTA ATAAAGATCTCTTGTTGCCATCATATGGTCAGGGTGACTGCAAATTGGTTGATTTGTTCATCCAGGGGTCGGAGAACACTGCACCTCCTCTGCGAATGGT GAATGTGCACGATGGTCTCTATTTCGTCCATTTTCAGTCCACACTATCGGTTTTGCAGTCTTTCTCGATTGCGGTGGCTTTTATCCATTCTCAGAGTTCG GCTTTGCGACCCAAAACTGTACAGGAAGCATGA
AA sequence Show only first row Show all	>Lus10023729 pacid=23148367 polypeptide=Lus10023729 locus=Lus10023729.g ID=Lus10023729.BGIv1.0 annot-version=v1.0 METTIPDAQNLSRSGNDSLEDFCDGKESSRDTTGLANPESKSRMRRINSKNHSIISKVKQLQKSKTWINGSFLHRIEIIDDWIPKHMVTVDEKYLRRCLH LINVGASWTSSCSVSIDSSLGSLDVWPNGFSPVKVGSEYINDITRFDLNCTTLETGNGSLVAGPAGDWIIGSIMGSKSMVNILQSPLLREYGNIEESNSK STGSISHELMNFPGGLSSYSSFKPDMETRLPINYRNVSETSHERLFSVSSTNSTFSDQSSSLSSSAALSQGMLQFTWKGGNPHFVLSLDDQKLVYVANLW KTESRDGSSLDYTYLFHSSKIHEHDSHLVGKMVVSTSFTLSENNSKTMVREFVLFGGNGSFVDMQSSNHELRKDRRLSRKVTQVFRKKRSLSKFGGSGTI LENSAWGPSQDNDYCVDSVGGCDLLERDLPSNYESTAIVVKEHIPQICQEKVGGWGLKFLQKASDKQHTGDVGACSDCSTSMDIILPAGLHGGPRTRNGG PASLIERWKSGGCCDCGGWDLGCPLTVLKGRSSNKDLLLPSYGQGDCKLVDLFIQGSENTAPPLRMVNVHDGLYFVHFQSTLSVLQSFSIAVAFIHSQSS ALRPKTVQEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33360			Protein of unknown function (D...		Lus10023729 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10039110 [exp]	6.1	0.7243
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	20.2	0.6850
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	21.2	0.7127
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10014753 [exp]	23.7	0.7237
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	30.8	0.6844
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	43.2	0.6659
AT4G13630			Protein of unknown function, D...		Lus10016673 [exp]	44.9	0.6967
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	60.3	0.6670
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	74.3	0.6555
AT1G60460			unknown protein		Lus10036440 [exp]	90.8	0.6018

Compare expression of checked genes

Lus10023729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.