Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 261 / 2e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 187 / 1e-58 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 184 / 9e-58 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 184 / 2e-57 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 182 / 9e-57 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 181 / 2e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24780 144 / 6e-42 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G24770 138 / 1e-39 ATVSP2, VSP2 vegetative storage protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011774 [exp] 531 / 0 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 187 / 1e-58 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 184 / 1e-57 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 178 / 4e-55 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 177 / 9e-55 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 164 / 1e-49 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 126 / 6e-36 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 89 / 4e-22 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10028259 [exp] 89 / 2e-20 AT2G39920 194 / 2e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066500 [exp] 360 / 6e-127 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 311 / 2e-107 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 188 / 2e-59 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 184 / 2e-57 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 183 / 5e-57 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 167 / 4e-51 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 156 / 3e-47 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 87 / 6e-20 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10023731 pacid=23148346 polypeptide=Lus10023731 locus=Lus10023731.g ID=Lus10023731.BGIv1.0 annot-version=v1.0 ATGGCAGGCCTCACTACTCTGCTGCTATGTGTCTGTGGTGTGTTTGTCAGTGTTGCAGCGGCAGACTGGAACATTCTTCACCACAGGAAGCAATCATCCA GAAAGGAACTGGGTATCAGCTTGGACAACTACTGCGAGAGCTGGAGGATGAACGTTGAGCTCCACAACATCCGGGATTTCCAAGTTGTCCCCGAGGAGTG TGTCACCTACATTGGTAACTACATTACGTCGACCCAGTACCAGATCGATATGCAGTTGACCATCGAGGAGTGCGTCGTCCACATCAGCACCAGCTGCAAC TTTTGGGAAAATGGCAAAGATGCGTGGCTGTTTGACATTGACGACACCCTCCTCTCCACCGTCCCCTACTTCAAGCACCACCAATTCGGGGGAGAGATGT TCAACCTGACTGCATTCGAGGAATGGGCGGAGCAACGGAAGGCACCAGCAGTGGAACACACGATGAAGTTGTTCAAGGAGTTAAAATCATCGGGAGTACA TATCTTCTTGGTCTCCAGCAGGAGGGAGCATCTCAGATCAGCCACAACTGACAACCTTGTTAATGTTGGGTACCATGGCTGGAAAGGCCTCATACTAAGG GGAGCAGATGACGAAGAGATTGGAGTGGTAGATTACAAAGCTAAAGCGAGGCAGCAATTGATCAATGATGGGTACAAGATCTGGGGGATTGTTGCAGACC AATACAGCAGCTTTGCCGGCTATCCACGTGCTGGAAGGACATTCAAGCTTCCAAATCCTTTGTATTATGTTTCTTAA
AA sequence Show only first row Show all	>Lus10023731 pacid=23148346 polypeptide=Lus10023731 locus=Lus10023731.g ID=Lus10023731.BGIv1.0 annot-version=v1.0 MAGLTTLLLCVCGVFVSVAAADWNILHHRKQSSRKELGISLDNYCESWRMNVELHNIRDFQVVPEECVTYIGNYITSTQYQIDMQLTIEECVVHISTSCN FWENGKDAWLFDIDDTLLSTVPYFKHHQFGGEMFNLTAFEEWAEQRKAPAVEHTMKLFKELKSSGVHIFLVSSRREHLRSATTDNLVNVGYHGWKGLILR GADDEEIGVVDYKAKARQQLINDGYKIWGIVADQYSSFAGYPRAGRTFKLPNPLYYVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	0	1
AT2G37195			unknown protein		Lus10019937 [exp]	1.0	0.9253
AT5G38790			unknown protein		Lus10034101 [exp]	1.4	0.8757
AT2G45320			unknown protein		Lus10030280 [exp]	2.6	0.8371
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	2.8	0.8542
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	3.5	0.8741
AT5G21050			unknown protein		Lus10019547 [exp]	4.9	0.8275
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	8.5	0.8363
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	9.8	0.8453
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	11.0	0.8005
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10039052 [exp]	11.2	0.7950

Compare expression of checked genes

Lus10023731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.