Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26740 360 / 4e-127 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) AT5G55240 348 / 9e-123 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1) AT2G33380 327 / 1e-114 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2) AT5G29560 279 / 8e-96 caleosin-related family protein (.1) AT1G23240 155 / 3e-47 Caleosin-related family protein (.1.2.3) AT1G70670 153 / 2e-46 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) AT1G70680 141 / 5e-42 Caleosin-related family protein (.1) AT1G23250 91 / 2e-22 Caleosin-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011775 [exp] 494 / 3e-180 AT4G26740 361 / 1e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10034325 [exp] 152 / 8e-46 AT1G70670 197 / 3e-64 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10041446 [exp] 139 / 3e-41 AT1G70670 203 / 2e-67 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10014588 [exp] 128 / 6e-37 AT1G70670 197 / 6e-65 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066600 [exp] 377 / 4e-134 AT4G26740 377 / 5e-134 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Potri.008G133800 [exp] 192 / 6e-62 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.010G107900 [exp] 189 / 1e-60 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF05042 [flax] [poplar] Caleosin Caleosin related protein
Representative CDS sequence Show only first row Show all	>Lus10023732 pacid=23148263 polypeptide=Lus10023732 locus=Lus10023732.g ID=Lus10023732.BGIv1.0 annot-version=v1.0 ATGGCTCGGGAGTTGGAGAGGAGGGACGGAATGTCTACAGAGGCGCCGCTTGCTCCCGTCACCTTCGACCGCCACGTCCGCGATGACCTCGAAGATCGCT TGCCCAAGCCCTATATGGCGAGGGCGTTGGAAGCACCAGATGCAGAGCATCCATATGGGACACCAGCACGCAGGCATAATGGGTTGAGTGTCCTTCAGCA GCATGTCGCCTTCTTTGATCAAGATGACAATGGCATCGTCTACCCTTGGGAAACTTACTCCGGATGCCGCCAGATCGGTTTCAACCCTATTTTCTCACTC ATTCTGGCTGTTGTCATCAATGCTGTCATGAGCTATCCCACTCTCCCTTCTTGGTTTCCTTCTCCATTGTTCCCAATCTACATTTACAACATTCACAAGG CCAAACATGGTAGCGACTCCGGCACCTACGACACTGAAGGAAGGTACCTGCCAGTGCACTTCGAGAACATCTTCAGCAAGTACGCCAGGACACAACCTGA CAGGCTGTCCTTTGGGGAGCTTTGGGACATGACTGAAGGCAACAGAGTTACCCTTGACTTCTTTGGATGGATTGCAAGCAAAGTGGAGTGGGGGATTCTG TACATCCTTGCAAGGGATGACGAAGGGTACCTGTCTAAAGAAGCTATAAGGCGCTGCTTTGATGGTAGCTTGTTCGAGTATTGTGCTAAGATGAACATGG GGGGCGACTTAAAGATGCGCTGA
AA sequence Show only first row Show all	>Lus10023732 pacid=23148263 polypeptide=Lus10023732 locus=Lus10023732.g ID=Lus10023732.BGIv1.0 annot-version=v1.0 MARELERRDGMSTEAPLAPVTFDRHVRDDLEDRLPKPYMARALEAPDAEHPYGTPARRHNGLSVLQQHVAFFDQDDNGIVYPWETYSGCRQIGFNPIFSL ILAVVINAVMSYPTLPSWFPSPLFPIYIYNIHKAKHGSDSGTYDTEGRYLPVHFENIFSKYARTQPDRLSFGELWDMTEGNRVTLDFFGWIASKVEWGIL YILARDDEGYLSKEAIRRCFDGSLFEYCAKMNMGGDLKMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	0	1
AT3G24130			Pectin lyase-like superfamily ...		Lus10016678 [exp]	1.0	0.9988
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	10.8	0.9941
AT1G65090			unknown protein		Lus10020377 [exp]	11.9	0.9840
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	14.6	0.9977
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10012489 [exp]	15.2	0.9942
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001279 [exp]	17.8	0.9976
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10017279 [exp]	20.2	0.9866
					Lus10004351 [exp]	20.8	0.9975
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10003079 [exp]	21.0	0.9808
					Lus10009206 [exp]	23.2	0.9975

Compare expression of checked genes

Lus10023732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.