Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35620 262 / 8e-90 eIFiso4E, EIF(ISO)4E, EIF(ISO)4E, EIF4E2, EIF(ISO)4E, LSP1, LSP, EIF(ISO)4E, EIF(ISO)4E, EIF(ISO)4E LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) AT4G18040 204 / 1e-66 LSP1, CUM1, AT.EIF4E1, EIF4E eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) AT1G29550 198 / 4e-64 Eukaryotic initiation factor 4E protein (.1) AT1G29590 198 / 2e-63 eIF4E3 eukaryotic translation Initiation Factor 4E3, Eukaryotic initiation factor 4E protein (.1.2) AT5G18110 115 / 6e-32 NCBP novel cap-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011776 [exp] 417 / 9e-151 AT5G35620 263 / 4e-90 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10011988 [exp] 218 / 3e-72 AT4G18040 315 / 4e-110 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10002785 [exp] 215 / 1e-70 AT4G18040 313 / 7e-109 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10005410 [exp] 209 / 1e-68 AT4G18040 318 / 3e-111 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015247 [exp] 209 / 1e-68 AT4G18040 322 / 1e-112 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015251 [exp] 156 / 3e-48 AT4G18040 241 / 3e-81 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10005704 [exp] 110 / 5e-30 AT5G18110 345 / 6e-122 novel cap-binding protein (.1) Lus10020282 [exp] 110 / 1e-29 AT5G18110 347 / 1e-122 novel cap-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066700 [exp] 314 / 2e-110 AT5G35620 254 / 1e-86 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.008G171100 [exp] 310 / 1e-108 AT5G35620 249 / 5e-85 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.011G077200 [exp] 233 / 7e-78 AT4G18040 299 / 1e-103 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Potri.013G057000 [exp] 112 / 9e-31 AT5G18110 358 / 6e-127 novel cap-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0625 [flax] [poplar] eIF4e PF01652 [flax] [poplar] IF4E Eukaryotic initiation factor 4E
Representative CDS sequence Show only first row Show all	>Lus10023733 pacid=23148253 polypeptide=Lus10023733 locus=Lus10023733.g ID=Lus10023733.BGIv1.0 annot-version=v1.0 ATGGCGACCAACGACACTGCGGCGACCGAAGTAAGCGACGCATCGGTGGTTACGTCCGCCGACGCAATGGCGGAGACGTCCCCTCAGTCTCACAAGCTCC ACAGAAAGTGGACCTTCTGGTTCGACAACCAATCCAAACCCAAGCAGGGCGCCGCTTGGGGCACCTCTCTTCGTAGTGTCTACACCTTCGACACCGTCGA GGAATTCTGGTGTTTGTATGAACAGGTATTTAAGCCTAGCAAGCTACCTGGACAAGCTGAATTCCACCTGTTTAGGGATGGGGTTGAACCCAAGTGGGAA GATCCAGAGTGTGCTAATGGGGGAAAGTGGAGTGTTACCTGTAGTAAAAACACCACCTTGGATAAGATGTGGCTCGAAACTCTGATGGCTTTGATTGGAG AGCAATTTGATGAATCCGAGGAGATATGTGGCGTGGTTGCCAGTGTGCGTACAAGGCAAGATAAACTTGCTCTCTGGACTAAGACGGCTGCTAATGAAGC TGTCCAGATGGGCATCGGAAGAAAGTGGAAAGATATCATCGATGTCACTGACAAACTCACCTACAATTTCCATGATGATTCTCGCAGGGAAAGATCTGTG AAGAGCCGATACAGCGTATGA
AA sequence Show only first row Show all	>Lus10023733 pacid=23148253 polypeptide=Lus10023733 locus=Lus10023733.g ID=Lus10023733.BGIv1.0 annot-version=v1.0 MATNDTAATEVSDASVVTSADAMAETSPQSHKLHRKWTFWFDNQSKPKQGAAWGTSLRSVYTFDTVEEFWCLYEQVFKPSKLPGQAEFHLFRDGVEPKWE DPECANGGKWSVTCSKNTTLDKMWLETLMALIGEQFDESEEICGVVASVRTRQDKLALWTKTAANEAVQMGIGRKWKDIIDVTDKLTYNFHDDSRRERSV KSRYSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10023733 [exp]	0	1
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	2.0	0.9344
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	3.9	0.9378
AT4G26210			Mitochondrial ATP synthase sub...		Lus10001771 [exp]	5.2	0.9342
AT5G18800			Cox19-like CHCH family protein...		Lus10033991 [exp]	5.2	0.9208
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	5.7	0.9227
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	7.1	0.9286
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031979 [exp]	8.7	0.9302
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	8.9	0.9196
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	14.7	0.9026
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	15.1	0.9282

Compare expression of checked genes

Lus10023733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.