Plant FIBer expression Database

Lus10023735 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011779
[exp]
185 / 1e-58 AT1G32120 69 / 9e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G067000
[exp]
131 / 7e-38 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Potri.008G170900
[exp]
124 / 3e-35 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
PFAM info
Representative CDS sequence
>Lus10023735 pacid=23148396 polypeptide=Lus10023735 locus=Lus10023735.g ID=Lus10023735.BGIv1.0 annot-version=v1.0
ATGGCGTCACTGGCAACACATTTCTCCGCCGCGCTGCTGCTTCTCCCGGTGGGTCTCCGCCTCCTCTTCACTTCGTCTTCCCTCTACCTCGACAACCCAT
CTCTGTTCCGATCCAAGGTTTGGTATTTCTCTGATCCCAAGTGGAAGAATCTCGATTTCTTCATCCTAACCGTCGCTCTCCCCATCGCTTCCTTTTCTCA
ACTCTTCCTCTTCTCGTCCTTCCCTGCCCACCCAACTTACCGATTCTCATTCCTTCATCAATCCCTACTCCTCTTCCTCTTCTGGGCATTGACCCTTCTC
TTTCTTCTGCGTGATTGCGTTTCCCTGTTGTTGATCAACGAGAGCATTTTGTTCGCCATATCTGGGGTGGTGTTCCTGCTGGAGTCTTCTATAATTGGGA
GAGGGGTTTCTGGTCTGGTTAGTTCGGTTGTTTACGGCTGGAGTGCTGATCTGACCATTGTTTGTGGGTTCTGTTGCTTGTATTTGGCAGTTAGGCCAAG
TGCATTCTTTGCTGAGTTTTTTCTGTCTTGTTGA
AA sequence
>Lus10023735 pacid=23148396 polypeptide=Lus10023735 locus=Lus10023735.g ID=Lus10023735.BGIv1.0 annot-version=v1.0
MASLATHFSAALLLLPVGLRLLFTSSSLYLDNPSLFRSKVWYFSDPKWKNLDFFILTVALPIASFSQLFLFSSFPAHPTYRFSFLHQSLLLFLFWALTLL
FLLRDCVSLLLINESILFAISGVVFLLESSIIGRGVSGLVSSVVYGWSADLTIVCGFCCLYLAVRPSAFFAEFFLSC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32120 unknown protein Lus10023735
[exp]
0 1
AT4G04980 unknown protein Lus10033704
[exp]
3.5 0.7008
AT4G12020 WRKY MEKK4, MAPKKK11... MAPK/ERK KINASE KINASE 4, MITO... Lus10012027
[exp]
22.8 0.6705
AT5G13220 ZIM JAS1, TIFY9, JA... TIFY DOMAIN PROTEIN 9, JASMONA... Lus10001803
[exp]
27.6 0.6623
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Lus10037792
[exp]
45.1 0.6509
AT1G75490 AP2_ERF DREB2D Integrase-type DNA-binding sup... Lus10024298
[exp]
49.3 0.6263
AT5G07830 ATGUS2 glucuronidase 2 (.1) Lus10037110
[exp]
49.6 0.5783
AT2G39710 Eukaryotic aspartyl protease f... Lus10000514
[exp]
54.4 0.6459
Lus10006099
[exp]
58.9 0.5863
Lus10009357
[exp]
60.7 0.6312
AT1G53035 unknown protein Lus10039835
[exp]
61.2 0.6209

Lus10023735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.