Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33385 391 / 2e-135 ARPC2B actin-related protein C2B (.1.2) AT1G30825 221 / 1e-69 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011780 [exp] 364 / 7e-124 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2) Lus10008071 [exp] 223 / 3e-70 AT1G30825 456 / 6e-163 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10002867 [exp] 139 / 3e-38 AT1G30825 223 / 1e-71 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067100 [exp] 550 / 0 AT2G33385 410 / 5e-143 actin-related protein C2B (.1.2) Potri.008G170800 [exp] 536 / 0 AT2G33385 410 / 2e-142 actin-related protein C2B (.1.2) Potri.001G073300 [exp] 224 / 8e-71 AT1G30825 449 / 1e-159 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.003G157700 [exp] 222 / 5e-70 AT1G30825 429 / 5e-152 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04045 [flax] [poplar] P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Representative CDS sequence Show only first row Show all	>Lus10023737 pacid=23148247 polypeptide=Lus10023737 locus=Lus10023737.g ID=Lus10023737.BGIv1.0 annot-version=v1.0 ATGAAGAAGAGAAAGAGCACTACTGGCAACATGGCTTGCTTTGAGAGGGAGTCACCTGCATTGAAACAACTCCTCCTCAAGTTATACCACGCTGAAAAGC CAGTGGAGATTGATCATCACTTGTATGAATTTGGGTCAGTGGAATACCATCTCCAGTCGTCAGCAGCTGATCCACACCATAGCTTCTTGTCAGTATCAAC TCCAAAACTCTCAGAAGGAGAATATTCGTCAAAAGGCCTCTCTGCCTACACCCTACAAATGGTACAAGACATGTGTTCTGAAGCCGCAGAGATTGTGGAG CCCCCCAAAGAAGGATATCAGCTCACTCTAAACCTCAACTTTTCTAGAATTCCTAAGAGAAAAGACTCAGAGAAAGTGGTGAGACGAATAGCCTCGGTGC AAGCTGTAATAGTGAGTTCGCAGCTGAAAGAAATATTCCGAAATGTCAGTAGCCATGAAATATGCAAGCCCATCAAACTTGTCTATTACCCAAGAGAAAC CTTCTATGTAATCAGACAGCCACAAAAAATTACCGCAGTATTCCCGATGCGTTTTAAAGAACATTCAGATGTCATTATTGCAACAGCATTCTTTCAGGAA CTTATGGACGTGGGTAGTTCAAAGAGATGGGCCAAAGCGCCACCCTGTACCTGGTCACCTATACCCCCACCAGAATTGAGGGGAGAGTCTATACAAGATT TGAGCACAAATGGCGGGTTTGTCAGTTTTGATATTTCCTCACGTCATGTTGAAGGTAAAAAGTTAGAGAAGACAGTATGGAGCTTATTGAACTTCTATGC CTATGTTAAAAACCATATAAAGTGCACCAGAGGTTTCATACAGAGAAAGATGCAAAAGCGTTTGGAAAGTCTGGTTGAGGTCCTGCACAAAGGGACCATG GACACCGATGAAAAAATTAAAAAGAGAAAAGGACGTCGTCACATCAGGAAACTGGTCAGCTTATCAAAGTTTAAAACACTTAAAAGAAGATTCAGTAACA TGGTCAACAAAATCAAGCATATTGGCTACAGAATCAAAATCCAGGGATTCAGTCGTTTTCGCAGACGATGGCTATCACTCCCAAAATTCTCTTCTTCTAA GGGATACGCCAGACTAGAGTAG
AA sequence Show only first row Show all	>Lus10023737 pacid=23148247 polypeptide=Lus10023737 locus=Lus10023737.g ID=Lus10023737.BGIv1.0 annot-version=v1.0 MKKRKSTTGNMACFERESPALKQLLLKLYHAEKPVEIDHHLYEFGSVEYHLQSSAADPHHSFLSVSTPKLSEGEYSSKGLSAYTLQMVQDMCSEAAEIVE PPKEGYQLTLNLNFSRIPKRKDSEKVVRRIASVQAVIVSSQLKEIFRNVSSHEICKPIKLVYYPRETFYVIRQPQKITAVFPMRFKEHSDVIIATAFFQE LMDVGSSKRWAKAPPCTWSPIPPPELRGESIQDLSTNGGFVSFDISSRHVEGKKLEKTVWSLLNFYAYVKNHIKCTRGFIQRKMQKRLESLVEVLHKGTM DTDEKIKKRKGRRHIRKLVSLSKFKTLKRRFSNMVNKIKHIGYRIKIQGFSRFRRRWLSLPKFSSSKGYARLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	0	1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	2.4	0.9538
					Lus10040842 [exp]	2.8	0.9638
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10021800 [exp]	3.0	0.9294
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	3.2	0.9637
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	3.5	0.9254
AT5G05450			P-loop containing nucleoside t...		Lus10040952 [exp]	4.2	0.9472
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	4.5	0.9534
AT5G55950			Nucleotide/sugar transporter f...		Lus10016648 [exp]	5.7	0.9299
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	6.2	0.9244
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	10.0	0.9147

Compare expression of checked genes

Lus10023737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.