Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33400 60 / 3e-10 unknown protein AT5G44040 54 / 7e-08 unknown protein AT1G04030 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011782 [exp] 372 / 2e-129 AT2G33400 83 / 3e-18 unknown protein Lus10008231 [exp] 49 / 2e-06 AT1G04030 202 / 1e-59 unknown protein Lus10003613 [exp] 48 / 5e-06 AT1G04030 211 / 1e-63 unknown protein Lus10001051 [exp] 42 / 0.0007 AT1G06660 283 / 6e-90 JASON, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067300 [exp] 106 / 4e-26 AT2G33400 79 / 1e-16 unknown protein Potri.008G170600 [exp] 76 / 2e-15 AT2G33400 69 / 2e-13 unknown protein Potri.002G258501 [exp] 52 / 3e-07 AT1G04030 172 / 1e-48 unknown protein Potri.013G047700 [exp] 47 / 8e-06 AT1G04030 147 / 1e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023739 pacid=23148314 polypeptide=Lus10023739 locus=Lus10023739.g ID=Lus10023739.BGIv1.0 annot-version=v1.0 ATGGGTTGCTTACTCGGCTGTTTCGGCCTTTCTTCCAAGCGAAAGCGCCGAAAACTTCCCAGCCGAATTCTTCCCAGAGATCATGGATACGGCAGTTACC AGCAGCTGGATTCTTCTGTCGTCTCCACAAACTCGGATTCTGAGCAAAGGAAGTTGAAGGAGCCACTGAATAGTCAGATCAGGAAGAAAGTGAGATTCAA TTTGAATGTCAAGGCATACGAGCCAATTCCACCAGACAGCTTCTGGGAAGAAGAAGAAGAAGATGATAAAGCAAAAAAAAGAGGGGAAAATCTTGAACCT TCTTCTCGCCCAACGGATATCTCGTCTTCTTATCCATCCAATTACAGATATAGAAACTGCATTTACAGCTACGACGATGAAGTGGAAGAGGAAGAAGAAT ACTTGTATGATGATAGTGATTTGGACTCGGATGAAGACTACTTGTACGAGGAGGAAGAACCAGAGGCTGATCAACAAAACGATATTGAAGAGCTCAGAAG AAGAAGAAAAGGAACTGAAGAAGAGGAACAAGTCTCTGAGCATTTCAGCTCTTTGAAAGTGAGTCCCAACTCTGGGATTGATTCGAAAGAAGAAGGAAGA TCGAGATGGCCTGAGATTACGGATCATCAGCACAAAAATTCTCGGGAGAAGAATCAATACATACATTCTGTGTTAAACCCAGTTGAGAATCTGGCTCAAT GGAAAGAAGTTAAAGCTAAAAGTAAGCAGCAGCCAGAGAAACGGCAGATGAAGGAGAATGCTGAGGTACATCTTATTCAGAAGCATACAATGCTTCCAGT TCAAGAACTTGCTGTGGATTCAAGCTTGGCAAACTGGTTAATTTCTCCAGCAACTTGTCATACAAAAGATGGATTTGATAAACGCTGTGCTGGTTCATGC CCAAGGAGAGAGAAGACGTTGGGAACTACTGAGATATCACCAGCATAG
AA sequence Show only first row Show all	>Lus10023739 pacid=23148314 polypeptide=Lus10023739 locus=Lus10023739.g ID=Lus10023739.BGIv1.0 annot-version=v1.0 MGCLLGCFGLSSKRKRRKLPSRILPRDHGYGSYQQLDSSVVSTNSDSEQRKLKEPLNSQIRKKVRFNLNVKAYEPIPPDSFWEEEEEDDKAKKRGENLEP SSRPTDISSSYPSNYRYRNCIYSYDDEVEEEEEYLYDDSDLDSDEDYLYEEEEPEADQQNDIEELRRRRKGTEEEEQVSEHFSSLKVSPNSGIDSKEEGR SRWPEITDHQHKNSREKNQYIHSVLNPVENLAQWKEVKAKSKQQPEKRQMKENAEVHLIQKHTMLPVQELAVDSSLANWLISPATCHTKDGFDKRCAGSC PRREKTLGTTEISPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33400			unknown protein		Lus10023739 [exp]	0	1
AT2G33400			unknown protein		Lus10011782 [exp]	1.4	0.9120
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	9.2	0.8441
AT5G62550			unknown protein		Lus10023614 [exp]	13.8	0.8192
AT4G17240			unknown protein		Lus10039062 [exp]	17.8	0.8557
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	18.8	0.8065
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	19.6	0.8584
AT5G58160			actin binding (.1)		Lus10024450 [exp]	21.8	0.7980
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	31.7	0.8410
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	33.8	0.7818
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	34.3	0.8258

Compare expression of checked genes

Lus10023739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.