Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14300 253 / 1e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 219 / 6e-68 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 197 / 5e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 194 / 1e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 190 / 8e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 174 / 3e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 147 / 1e-40 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 127 / 2e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 114 / 1e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 115 / 2e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011783 [exp] 345 / 2e-116 AT4G14300 290 / 1e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 289 / 3e-94 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 266 / 8e-86 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022889 [exp] 239 / 1e-75 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024937 [exp] 227 / 1e-70 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 194 / 5e-57 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 191 / 3e-56 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 190 / 6e-56 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 191 / 1e-55 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170400 [exp] 275 / 1e-88 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 264 / 1e-84 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 243 / 8e-77 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 239 / 3e-75 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G015700 [exp] 198 / 7e-59 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 195 / 1e-57 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 195 / 1e-57 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 195 / 1e-57 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 188 / 3e-55 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 182 / 1e-52 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10023740 pacid=23148285 polypeptide=Lus10023740 locus=Lus10023740.g ID=Lus10023740.BGIv1.0 annot-version=v1.0 ATGGATTCAGATCAGGGCAAGCTTTTCGTCGGTGGGATTTCTTGGGAGACGAGTGAAGATAAGCTCAAAGAGCACTTCGGTCAGTACGGCGATGTACTTC AGACTGCCGTTATGCGGGACGGGACAAAACCACTGGCAGGCCTAGGGGTTGAGGCAAAAAGAGCATTGTCGAGAGAGGAGCAGCAAAGCAATGTCAAACC TGGTAATTTAAATTCTGCTAGAAGCACTGGTGGTGGCAGTGGTGGATACGCTAAGACCAAGAAGATCTTTGTTGGTGGTTTGCCTCCCTCGTTGACTGAA GATGATTTCCGCCAGTATTTTGAAGCTTATGGCCATGTTACTGACGTAGTAATTATGTACGACCAAAACACACAACGCCCTCGTGGATTTGGATTTATTT CCTTTGATTCCGAGGATTCAGTTGATCAGGTGTTGCATAAGACATTTCACGATTTGAGCGGGAAGCAAGTTGAAGTGAAGAGGGCTCTTCCTAAAGATGC CAATCCTGGTGGTGGCAGTCGCCCCATGGGTGGTAATGCTGCTGGTGCAGGTGGTGGGGGAGGTTATCAAAGCTATGGTGCTTCTGGCGGGAATGTAAGT TCATATGACGGTAGAATGGATTCGAGTAGGTATATGCAACCCCAGACTGCTGGAGGTGGCTTTCCTCCTTATGGATCGTCTGGGTACGGTACGCCCAGGT ATGGCTATGGCGCTGCAAGTAATGGAGTTGGATACGGTGGATATGGAAGTTACGGTGGTGGTGGTGGTGCTGGATATGGGGCCCCTGCAGGTGCACCTTA TGGAAACCCCAATGTCCCAAATGCTGGATATGGTAGTGGTCCCCCTGGTGCTCCCAAGAGGTCATTGGATTGGCCAGCTACCTCTGGTTACGGAGGGTTT GGGCATGGGGGTTCTGGTGGTACTCCAAATAGCACTCCTGGAGAACAACAAGGAGTGAGCGGAGGCTATGCGTCAGGTGGTTATGGTGATGCAAATGGGA ATTCAGGATATGGTAATGCAGCATGGAGATCTGAATCCTCGCAAGGTTCAGGGAATTATGCTACTCAAGGAAATGGCGTTGCTTATGGTGGTGGTTACAG TAGTGCTCCAGCCCGACAAGCACAACAACAGTGA
AA sequence Show only first row Show all	>Lus10023740 pacid=23148285 polypeptide=Lus10023740 locus=Lus10023740.g ID=Lus10023740.BGIv1.0 annot-version=v1.0 MDSDQGKLFVGGISWETSEDKLKEHFGQYGDVLQTAVMRDGTKPLAGLGVEAKRALSREEQQSNVKPGNLNSARSTGGGSGGYAKTKKIFVGGLPPSLTE DDFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDSEDSVDQVLHKTFHDLSGKQVEVKRALPKDANPGGGSRPMGGNAAGAGGGGGYQSYGASGGNVS SYDGRMDSSRYMQPQTAGGGFPPYGSSGYGTPRYGYGAASNGVGYGGYGSYGGGGGAGYGAPAGAPYGNPNVPNAGYGSGPPGAPKRSLDWPATSGYGGF GHGGSGGTPNSTPGEQQGVSGGYASGGYGDANGNSGYGNAAWRSESSQGSGNYATQGNGVAYGGGYSSAPARQAQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10023740 [exp]	0	1
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	4.7	0.8995
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011783 [exp]	6.2	0.9150
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	8.7	0.8738
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	13.6	0.8973
AT5G54900		ATRBP45A	RNA-binding protein 45A (.1)		Lus10032645 [exp]	17.1	0.8576
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	23.2	0.8936
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	28.4	0.8842
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Lus10037263 [exp]	28.7	0.8551
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	29.2	0.8774
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10008215 [exp]	29.5	0.8393

Compare expression of checked genes

Lus10023740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.