Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23530 1260 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23510 1255 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23470 647 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 618 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23460 262 / 9e-81 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G33110 106 / 1e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 99 / 4e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G76090 50 / 5e-06 SMT3 sterol methyltransferase 3 (.1) AT5G13710 47 / 3e-05 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 44 / 0.0004 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011784 [exp] 1573 / 0 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10014230 [exp] 97 / 2e-21 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022684 [exp] 97 / 3e-21 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023995 [exp] 44 / 0.0005 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10009537 [exp] 43 / 0.0007 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170300 [exp] 1355 / 0 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 1331 / 0 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067800 [exp] 668 / 0 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 667 / 0 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 652 / 0 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 647 / 0 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.018G060000 [exp] 96 / 7e-21 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G077000 [exp] 58 / 1e-08 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.018G018900 [exp] 47 / 3e-05 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.001G263700 [exp] 46 / 8e-05 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00890 [flax] [poplar] FAD_binding_2 FAD binding domain CL0063 [flax] [poplar] NADP_Rossmann PF02353 [flax] [poplar] CMAS Mycolic acid cyclopropane synthetase CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10023741 pacid=23148374 polypeptide=Lus10023741 locus=Lus10023741.g ID=Lus10023741.BGIv1.0 annot-version=v1.0 ATGAGGGTGGCGGTAGTGGGTTCCGGGATTAGCGGCCTGGCGGCGGCGATGACTGCTGCGGCGGGAGGTGCGGAGGTTGTAGTGTACGAGAAGGAAGAAT GGGTAACATACCCAAATATGATGGAGCTATTTGAAACACTTGGAGTTGAGATGGAGCTGTCTGACATGTCATTCTCAGTCAGTTTGGAAGATGGGAAAGG CTGTGAATGGGGCAGTAGAAATGGCTTGTCAGGTTTGTTTTCACAGAAGAAGAATGCACTCAATCCATACTTCTGGAAAATGATCCGTGACATCGTCAGA TTCAAAGATGATGTTCTTAGTTACATTGAGATGGTTGAAAACAACCCTGATATGGATCGAAGCGAAACACTGGGGCAGTTCATCAAGTCAAGGGGCTACT CTGAGATGTTTCAGAAGGCTTATCTCGTTCCAATGTGTGGCTCCATATGGTCTTGTCCTTCAGAAGGAGTTATGAACTTCTCTGCTTTCTCAGTGCTCTC TTTCTGCCGAAATCACCATCTACTTCAGCTGTTAGGAAGGCCACAGTGGCTGACTGTCAAAGGAAGGTCACATTCATATGTCAACAAGGTTAGGGAATAT CTGGAGCAATTTGGATGCCAGATAAGGACTAATTCTGAGGTTGTGTCCATTTCTGTTCCCAGTACAGATGACGGCTGCACACTAGTATGTAAAGATGGTT CTCAAGAGCTATTTGATGGCTGCATAGTAGCTGTTCATGCTCCTGATGCGCTGAAGATGCTTGGAGAGCAAGCAACATCTGATGAAGCACGAATTCTCGG AGCTTTCCAGTATATGTCAAGTGATATCTACCTTCACCGTGATACCAAATTCATGCCTCGGAATCCAGCTGCATGGAGTGCCTGGAACTTTTTAGGGAAT ACAGACACTAAAGTCTGCCTCACTTACTGGCTCAACATCCTTCAGAATCTTGGGGAAACAAACCAACCTTATCTAGTGACACTTAATCCAGATAATCCAC CTCAAAAAACCTTACTGAAGTGGAGAACTAGTCATCCAGTCCCTTCTGTCGCAGCTTCAAAAGCTGCGGCTGAGCTTAACAATATTCAAGGCAAAAGGGG AATTTGGTTTTGTGGAGCATACTTGGGTTATGGCTTCCATGAAGATGGATTGAAGTCTGGCTTGCTTGCTGCCAATAGTTTTCTTGGGAAGAGCTGTACT ATTCTCAACAACCCAAAACACATGGTGCCATCTTGGTCAGAAACTGCAGGGCGCCTATTTGTAACTCGATTTCTTGGACAGTATATTTCTTCTGGCAGTC TGATCTTGTTGGAGGAAGGAGGCACAATGTTCAACTTTGAAGGAACTGGGAAGAAGTGTTTCTTGAAAACTGTTCTGAGAATCCACAGTCCACAATTTTA CTGGAAGATAATGACACAGGCTGATTTAGGCCTGGCAGATGCATATATCAACGGCGATTTTTCCTTTGTAGATAAGGATGAAGGACTTCTAAATTTCTTC ATGGTTCTGATTTTGAATAGAGATACCAACAAAACGACCTCCGAATTGAGCAAGAGAAGAGGCTGGTGGACTCCTATGTTGTTCACAGCAAGTATTGCAT CGGCAAAGTTCTTCCTTCACCATGTTTCAAGGCAGAACACACTTACTCAAGCTCGGAGGAACATCTCTCGTCATTATGACTTGAGTAATGAACTATTCAG CTTGTTCTTGGATGACACAATGACTTACTCCTGTGCCGTGTTCAAGTCAGAAGAAGAGGACTTGCGAGCTGCACAGATGAGGAAGATCTCACTTCTGATT GAGAAAGCGAAAATCAGTAAAGGGCAGGAAGTTCTGGAGATAGGTTGTGGGTGGGGCACATTAGCCATTGAAGTTGTAAGAAGAACTGGATGCAAGTATA CAGGCATCACCCTTTCTGAAGAGCAACTCAAGTATGCAGAGATGAAAGTCAAGGAAGCTGGACTTCAGGATCGAATCAAGTTTATTCTCTGTGATTACCG CCAACTGTCGCAACACTACAAGTTTGACAGGATCATATCCTGTGAAATGATTGAAGCTGTTGGGCATGAATTCATGGAAGAGTTCTTCGGCTGCTGCGAA TCGGCTCTGGCAGAAAACGGACTTCTTGTTCTTCAGTTTATTTCGATACCGGAAGAAAGATATGATGAGTACAGGAGAAGTTCGGATTTCATAAAAGAGT ACATATTCCCTGGCGGATGTTTGCCTTCATTGGCTAGGATTACCACAGCCATGGCTGCTGCATCAAGGCTCTGCGTGGAACAAGTGGAGAACATAGGAAT CCATTACTACAAAACCCTGAGACACTGGAGAACAAATTTCTTGGCGAACAGGAACAAAATTATGGGGCTCGGATTCGACAAAAAGTTCATCAGAACGTGG GAGTACTACTTTGACTACTGTGCAGCTGGGTTCAAGACTCACACTCTAGGAACTTATCAGGCAAGAAAGTTGCCATTTTAG
AA sequence Show only first row Show all	>Lus10023741 pacid=23148374 polypeptide=Lus10023741 locus=Lus10023741.g ID=Lus10023741.BGIv1.0 annot-version=v1.0 MRVAVVGSGISGLAAAMTAAAGGAEVVVYEKEEWVTYPNMMELFETLGVEMELSDMSFSVSLEDGKGCEWGSRNGLSGLFSQKKNALNPYFWKMIRDIVR FKDDVLSYIEMVENNPDMDRSETLGQFIKSRGYSEMFQKAYLVPMCGSIWSCPSEGVMNFSAFSVLSFCRNHHLLQLLGRPQWLTVKGRSHSYVNKVREY LEQFGCQIRTNSEVVSISVPSTDDGCTLVCKDGSQELFDGCIVAVHAPDALKMLGEQATSDEARILGAFQYMSSDIYLHRDTKFMPRNPAAWSAWNFLGN TDTKVCLTYWLNILQNLGETNQPYLVTLNPDNPPQKTLLKWRTSHPVPSVAASKAAAELNNIQGKRGIWFCGAYLGYGFHEDGLKSGLLAANSFLGKSCT ILNNPKHMVPSWSETAGRLFVTRFLGQYISSGSLILLEEGGTMFNFEGTGKKCFLKTVLRIHSPQFYWKIMTQADLGLADAYINGDFSFVDKDEGLLNFF MVLILNRDTNKTTSELSKRRGWWTPMLFTASIASAKFFLHHVSRQNTLTQARRNISRHYDLSNELFSLFLDDTMTYSCAVFKSEEEDLRAAQMRKISLLI EKAKISKGQEVLEIGCGWGTLAIEVVRRTGCKYTGITLSEEQLKYAEMKVKEAGLQDRIKFILCDYRQLSQHYKFDRIISCEMIEAVGHEFMEEFFGCCE SALAENGLLVLQFISIPEERYDEYRRSSDFIKEYIFPGGCLPSLARITTAMAAASRLCVEQVENIGIHYYKTLRHWRTNFLANRNKIMGLGFDKKFIRTW EYYFDYCAAGFKTHTLGTYQARKLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	0	1
AT4G11780			unknown protein		Lus10024488 [exp]	1.4	0.9229
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	3.0	0.9238
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	3.5	0.9172
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10020012 [exp]	5.7	0.8384
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	6.0	0.8838
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	6.5	0.8849
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	8.5	0.8979
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10002527 [exp]	9.2	0.8491
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	9.5	0.8832
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	10.2	0.8355

Compare expression of checked genes

Lus10023741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.