Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33420 1404 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 1335 / 0 Protein of unknown function (DUF810) (.1) AT2G25800 663 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 618 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT5G06970 365 / 1e-108 Protein of unknown function (DUF810) (.1) AT4G11670 210 / 2e-55 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011785 [exp] 1677 / 0 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 648 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 374 / 6e-118 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 379 / 1e-113 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 352 / 3e-103 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 318 / 4e-97 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 315 / 1e-96 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008430 [exp] 305 / 3e-93 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 303 / 2e-92 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068000 [exp] 1496 / 0 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 1471 / 0 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 699 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 659 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 617 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.001G030100 [exp] 363 / 6e-108 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 248 / 7e-68 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10023742 pacid=23148248 polypeptide=Lus10023742 locus=Lus10023742.g ID=Lus10023742.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACCACACTAAGAACAACCTAGATTCATTCTCCGGCATCGCTCCCGCCATGGAGGAGGACGTTGTCGGCGACTTAACCTGGCCGTTCGGGG ACCTCAACGGTCTCGACGTCGACGACATCCGCGAGACCGCTTATGAGGTCTTCTTCACGGCCTGTAGGTCTTCCCCTGGATTCGGCGGTGGAAGGAATGC TCTGTCGTTCTACTCCACCCATAACCATCACCAGGACGGAGGAGGTGGGGGAGAAGGAGCAGGAGGAGTCGGATTCGGGTCGTTGTCATTTGGGTCATCG TCGGCTTCAGCATCGTTGGGAGGGAGACTGGGCGGAGGAGGCGCTGTGGTTGTGACGTCCCCGATCAGTAAAATCAAGCGAGCATTGGGTCTGAAAATGC TCAAAAGATCTCCGTCGAGGAGAATGTCAAGCTTTGGAGGTGGATTCACGGGTGGTGGTGGTGGCGGAGGAAGCTTCAACGGCGGAAGCAGTGGAGGTGG AGGGAATGGGGGTTCTTCGGCGCCTAACTCTCCAAGCACGCCACAACATCATCACACCGTGTTCAGCTCCCCCAATATTGGGTTTTCCACATTGCAGCCG CAACGTCCGAGAAGACCTCTAACGTCTGCAGAAATTATGAGACTTCAAATGAGAGTTACCGAACAGAGCGATAACCGGCTGCGGAAGACCCTAATGCGCA CCCTTGTCGGCCAAATAGGGAGACGAGCAGAGACAATAATATTACCACTAGAGCTGCTCCGCCATTTAAAACCATCGGAGTTCAACGACGGTCCAGAGTA TCACGTATGGCAAAGACGACAACTCAAAGTGTTAGAGAACGGGCTTTTAATCTATCCATCCGTCCCGGTCGACAAATCCAACACCCACGCCGTCCGTCTA CGAGAAATAATCCGTTCAAGCGAGACCCGACCCGTAGACACAAGCAAAAACTCCGAGACCATGAGAGCCCTTTGCAACACTGTAGTCTCCCTTTCATGGA GGAGCACGAACAGCAACGCCACCGACGTTTGCCACTGGGCTGATGGATACCCACTTAACATCAACATCTACATTGCCTTACTTCGATCCACGTTCGACCT TAGGGAAGAGACCATGGTTCTGGACGAGGTGGACGAGCTTATGGAGCTAATGAAGAAGACATGGACCACCCTTGGGATCAGTCGTCCGATTCACAATCTC TGCTTCACTTGGGTTTTGTTCCAGCAGTATGTATTGACTTCCCAATCCGAACCGGACTTGCTTTACGCAGCGCACACCATGTTATCGACGGAAGTCGCCA GTGACTCGAAAAGGGTTGATAGGGAAGCTCTGTATGTAAAGCTTTTGTCTTTTATGTTGGAGTCGATGCAAGGTTGGGCTGAGAGGAGGCTGCTTCACTA CCATGACTATTTCCAGAGAGGCACTGTTGTTCTCATTGAGAATCTGCTGCCATTGGCGTTATCCGCGTCCAGGATTTTAGGCGAAGATGTTTCAATCGTC GAAGGGACGACGGGGAATGAAAAGAGATCATCATCATCCACTAGGATGGTTGTGGATTCGTCCGAGGATCGAGTCGGCGATTACATTCGAGCTTCAATCA AGAATGCTTTTGCTAAGATCATTGAAACCGGAAGCTACAAGAGTACTAGTTTGGAAGTGAAAGATGAGGCGACTGAGGCATTGCTTCAATTGGCTAAAGA GACAGAGGAATTGGCAATGAGAGAAAGGGAATGTTTTAGTCGTATATTGAAGAAATGGAACCCAGGTGCTGCTAGTATTGCATCTGTAACTCTACATCAA TGCTATGGAGCTGTATTGAAGCAATATCTAGCTGGCGTGACAGTGTTGAATCAGGAAACAGTAGAAGTACTCCACAGGGCTGCCAAGCTTGAAAAGGCGA TGGTTCAAATGATAGTGGAGGACTCTGAGGAGTGTGAAGATGGAGGCAAGAACATCGTCAGAGAGATGGTTCCCTATGAGGTTGATTCAGTCATATTGAA ACTTGTTAAACAGTGGATTGATGACAGGTTGAAGATAGGCGGCGAATGCGTCCTTCGAGCCAAAGAGTCTGAGACATGGAATCCCAAGTCCAAAAATGAA CCTTATGCTCAATCAGCTGTGGAGTTGATCAAAATAGCCACTGAAACGGTGGAAGAATTCTTTCAAACGCCTATTGGGATCACAGACGACCTCGTTTGCG CCCTTGCAGAAGGTCTTGAACAGCTGTTCATAGAATATGCCAACTTTGTATCAACTTGTGGATCCAAGCAAAGCTATCTTCCAACTCTTCCTCCCTTAAC CAGATGCAACCGTGACTCCAAGTTCTTTAAACTGTGGAAAATAGCAGCTCCTTGCACCATGTCAGTGGAGGATCTTCACCAAAATGGAATCAATGAAGTG CACCATACGCGACCATCAACTAGTCGTGGAACGCAACGCCTTTACATTCGACTCAACACGTTGCATTACCTTGTTTCTCACCTACAGGCACTTGACAAGA CCCTTGCATTGGCTCCAAGATATAATTCAGCCAGAACCCGTCATGCCAGTAGTAGAAGGCAACACAGTATCTCCTCTTACTTCGAACAAGCCCACACCGC CATCCAATCTGCCTGCCAACATGTATCAGAAGTGGCCGGTTATCGCTTGATATTCCTCGACTCCAGCTCCGTGATATACGAGTCTCTTTATGTGATTGAT GTAGCCAATGCAAGAATCAAACCAGCACTGAGAATCCTCAAGCAGAATCTCACTCTCATGAGCGCAATTCTCACAGATCGAGCTCAATCTCTAGCGATGA AAGAAGTAATGAAGGCCACGTTCGAGGCCTTTCTGATGGTTTTACTTGCAGGTGGAGGCTCCAGGGTGTTCTACAGAACTGATCATCCTATGATTGAGGA GGATTTCCAGAGCTTGAAGCGCATGTTCTGCACATGTGGTGAAGGGCTGATGAATGAAGACCTTGTGGAGAGGGAAGGTGAGATAGCTGAAGGTGTCGTC ACATTAATGGGAGAATCTACCGAGCAACTAATGGAAGATTTCAGCGTTGCTGCCAGTGAGACAAGCGGTGTAGGAGTGCTGAGTTCGGGTCAGAAACTGC CAATGCCACCAACAACAGGAAGGTGGAATAGAAGGGATCCCAACACAATCTTGAGAGTTTTATGCCACAGGAACGACAGAGTGGCTAATTTATTCCTCAA GAAATCTTTCCAGCTTGCCAAAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10023742 pacid=23148248 polypeptide=Lus10023742 locus=Lus10023742.g ID=Lus10023742.BGIv1.0 annot-version=v1.0 MAANHTKNNLDSFSGIAPAMEEDVVGDLTWPFGDLNGLDVDDIRETAYEVFFTACRSSPGFGGGRNALSFYSTHNHHQDGGGGGEGAGGVGFGSLSFGSS SASASLGGRLGGGGAVVVTSPISKIKRALGLKMLKRSPSRRMSSFGGGFTGGGGGGGSFNGGSSGGGGNGGSSAPNSPSTPQHHHTVFSSPNIGFSTLQP QRPRRPLTSAEIMRLQMRVTEQSDNRLRKTLMRTLVGQIGRRAETIILPLELLRHLKPSEFNDGPEYHVWQRRQLKVLENGLLIYPSVPVDKSNTHAVRL REIIRSSETRPVDTSKNSETMRALCNTVVSLSWRSTNSNATDVCHWADGYPLNINIYIALLRSTFDLREETMVLDEVDELMELMKKTWTTLGISRPIHNL CFTWVLFQQYVLTSQSEPDLLYAAHTMLSTEVASDSKRVDREALYVKLLSFMLESMQGWAERRLLHYHDYFQRGTVVLIENLLPLALSASRILGEDVSIV EGTTGNEKRSSSSTRMVVDSSEDRVGDYIRASIKNAFAKIIETGSYKSTSLEVKDEATEALLQLAKETEELAMRERECFSRILKKWNPGAASIASVTLHQ CYGAVLKQYLAGVTVLNQETVEVLHRAAKLEKAMVQMIVEDSEECEDGGKNIVREMVPYEVDSVILKLVKQWIDDRLKIGGECVLRAKESETWNPKSKNE PYAQSAVELIKIATETVEEFFQTPIGITDDLVCALAEGLEQLFIEYANFVSTCGSKQSYLPTLPPLTRCNRDSKFFKLWKIAAPCTMSVEDLHQNGINEV HHTRPSTSRGTQRLYIRLNTLHYLVSHLQALDKTLALAPRYNSARTRHASSRRQHSISSYFEQAHTAIQSACQHVSEVAGYRLIFLDSSSVIYESLYVID VANARIKPALRILKQNLTLMSAILTDRAQSLAMKEVMKATFEAFLMVLLAGGGSRVFYRTDHPMIEEDFQSLKRMFCTCGEGLMNEDLVEREGEIAEGVV TLMGESTEQLMEDFSVAASETSGVGVLSSGQKLPMPPTTGRWNRRDPNTILRVLCHRNDRVANLFLKKSFQLAKRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33420			Protein of unknown function (D...		Lus10023742 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10009688 [exp]	7.7	0.8410
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Lus10023581 [exp]	11.6	0.8439
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	27.2	0.8394
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	28.3	0.8331
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	31.3	0.8383
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	38.3	0.8329
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	38.3	0.8323
AT3G52610			unknown protein		Lus10014215 [exp]	44.9	0.8286
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	47.8	0.8316
AT4G10950			SGNH hydrolase-type esterase s...		Lus10001532 [exp]	51.0	0.8127

Compare expression of checked genes

Lus10023742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.