Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 798 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 746 / 0 Major facilitator superfamily protein (.1) AT2G40460 572 / 0 Major facilitator superfamily protein (.1) AT3G54140 507 / 1e-174 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 505 / 9e-174 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 484 / 4e-165 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 481 / 1e-164 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 436 / 2e-147 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 407 / 6e-135 Major facilitator superfamily protein (.1) AT3G54450 393 / 2e-130 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011786 [exp] 1135 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 748 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 747 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 736 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 725 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 676 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 521 / 1e-179 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 510 / 2e-175 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 501 / 1e-171 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170100 [exp] 962 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 959 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258900 [exp] 801 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 765 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 579 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 507 / 2e-174 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 491 / 2e-168 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 486 / 1e-166 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 485 / 7e-166 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111900 [exp] 484 / 7e-166 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10023743 pacid=23148337 polypeptide=Lus10023743 locus=Lus10023743.g ID=Lus10023743.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAGCTGAAAATGACTACACACAAGATGGAACAGTGGATCTGAAAGGCAACCCAGTTCGCCGTTCAAAGCGTGGTGGCTGGCGAGCTTGCT CTTTCGTTGTTGTGTATGAGGTGTTCGAAAGGATGGCGTACTACGGGATATCGACAAATTTGGTGATATACTTAACCAAAAAGCTGCATCAAGGAACTGT TAAATCCTCCAATAACGTCACCAATTGGGTCGGCACCATTTGGATGACTCCTATCTTGGGTGCCTACGTCGCCGACGCCCACCTCGGCCGTTACTGGACT TTCGTCTCCGCCTCCCTCATCTACCTCTCCGGGATGTCGCTACTGACGCTAGCGGTTTCACTCCCGGCGCTGAGGCCGCCGCACTGCACAGAGGCAGACG TGAGCAAGTGCCACAATGCTTCCTCCTTACAGCTGGGAGTCTTCTTCGGGGCACTCTACATACTTGCCATCGGCACGGGAGGGACAAAGCCTAACATCTC GACCATAGGGGCGGACCAGTTCGACGATTTCGAGCCCAAGGAGAAGAGGCACAAACTCTCATTCTTCAACTGGTGGATGTTCAGCATCTTCTTCGGGACT CTGTTCGCCAACACGGTTCTGGTATACATACAGGACAATGTCGGGTGGACCATCGGGTACGGGTTGCCCGCTTTGGGGCTGCTGATATCCATCGCCATAT TCCTTGCCGGGACACCCTTTTATAGGCACAGAGTTCCGAGCGGGAGCCCTTTTAAAAGGATGGCTACGGTGATCGTGGCGGCTGGGAGGAAATGGAAAGT TAATGTTCCCAGTGATCCTAAGGAGCTGTATGAGCTTGATTTGGGTGAGTATGCTAAAGGGGGCAAGTTCAGGATTGATTCTACTCCATCACTCAGGTTT TTAAGCAAAGCAGCGGTGCAAACTGGGTCAGTCGGAGAATGGCTATTGTGCCCAGTGACACAAGTAGAAGAAACAAAGCAGATGCTGAGAATGATACCAA TTCTGGTAGCAACATTCATTCCCAGCACAATGATTGCTCAGGTCAATACCTTGTTCGTCAAGCAAGGAACAACCCTTGACCGACAGATCAACAGCTTCCA CATCCCTCCTGCCAGTTTATCAGGATTCGTCACGCTCTCCATGCTCATCTCCGTCGTGTTATACGATAGATTCTTCGTCCCTGCGATGAGGAAATGGACC AAGAACCCGCGAGGTATTACGCTTCTCCAGAGGATGGGAATCGGACTGGTTTTCCATATTGTTATAATGATGGTAGCATCGCTAACTGAAAGGCACAGGC TGAGCGCAGCAAGGAAGTACAACGTTGTCGAAAATGGAGGCCAGATTCCTCTGTCGATTTTTGTATTGCTCCCTCAGTTTTTACTGATGGGGACTGCTGA TGCTTTCTTGGAAGTGGCCAAGATTGAGTTCTTCTACGATCAGGCTCCGGAGAGCATGAAGAGCCTTGGCACTTCATACTCCACCACTAGCCTTGGCATT GGCAACTTCATTAGCAGTTTCCTTCTGTCCACCATTTCTGATATAACCAAGAGGAATGGCCACAAGGGTTGGATCAGGAATAATTTGAATGCTTCCCATC TGGACTACTACTATGCGTTTTTCGCAGTGCTTAACTTCTTGAACTTGGGCTTCTTCTTGGTTATGATTAGGTTCTATGTTTACAAGGCTGAAGTTTCGGA TTCTATGCAAGTTCTAGCTGAAGAGTTGAAGCAGGGGACTCAGTTGAGTGAATATTCATCATCATCCCCCAACCAACAACTTGTATCTGCAAAGTGA
AA sequence Show only first row Show all	>Lus10023743 pacid=23148337 polypeptide=Lus10023743 locus=Lus10023743.g ID=Lus10023743.BGIv1.0 annot-version=v1.0 MEGGAENDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYYGISTNLVIYLTKKLHQGTVKSSNNVTNWVGTIWMTPILGAYVADAHLGRYWT FVSASLIYLSGMSLLTLAVSLPALRPPHCTEADVSKCHNASSLQLGVFFGALYILAIGTGGTKPNISTIGADQFDDFEPKEKRHKLSFFNWWMFSIFFGT LFANTVLVYIQDNVGWTIGYGLPALGLLISIAIFLAGTPFYRHRVPSGSPFKRMATVIVAAGRKWKVNVPSDPKELYELDLGEYAKGGKFRIDSTPSLRF LSKAAVQTGSVGEWLLCPVTQVEETKQMLRMIPILVATFIPSTMIAQVNTLFVKQGTTLDRQINSFHIPPASLSGFVTLSMLISVVLYDRFFVPAMRKWT KNPRGITLLQRMGIGLVFHIVIMMVASLTERHRLSAARKYNVVENGGQIPLSIFVLLPQFLLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGI GNFISSFLLSTISDITKRNGHKGWIRNNLNASHLDYYYAFFAVLNFLNLGFFLVMIRFYVYKAEVSDSMQVLAEELKQGTQLSEYSSSSPNQQLVSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	0	1
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	1.7	0.8853
					Lus10012330 [exp]	3.5	0.8530
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	5.5	0.8520
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	6.7	0.8525
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10021998 [exp]	14.1	0.7341
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	17.9	0.8247
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	19.3	0.8018
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	22.4	0.8551
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10034296 [exp]	23.2	0.8583
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	24.5	0.7996

Compare expression of checked genes

Lus10023743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.