Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22310 206 / 1e-70 Uncharacterised protein family (UPF0041) (.1) AT4G14695 192 / 3e-65 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2) AT4G05590 187 / 5e-63 unknown protein AT5G20090 79 / 2e-20 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011790 [exp] 221 / 1e-76 AT4G22310 202 / 3e-69 Uncharacterised protein family (UPF0041) (.1) Lus10032564 [exp] 164 / 5e-54 AT4G22310 163 / 5e-54 Uncharacterised protein family (UPF0041) (.1) Lus10025851 [exp] 73 / 5e-18 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10038250 [exp] 73 / 5e-18 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G023100 [exp] 199 / 3e-68 AT4G22310 205 / 3e-70 Uncharacterised protein family (UPF0041) (.1) Potri.001G333902 [exp] 77 / 1e-19 AT5G20090 144 / 5e-46 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.012G095133 [exp] 68 / 4e-16 AT5G20090 199 / 5e-68 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.015G092500 [exp] 67 / 1e-15 AT5G20090 189 / 7e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03650 [flax] [poplar] MPC Mitochondrial pyruvate carriers
Representative CDS sequence Show only first row Show all	>Lus10023745 pacid=23148370 polypeptide=Lus10023745 locus=Lus10023745.g ID=Lus10023745.BGIv1.0 annot-version=v1.0 ATGGCGACTTCCAAGCTACAAGCTCTATGGAATCACCCTGCTGGTCCTAAAACCATCCACTTTTGGGCTCCAACGTTCAAATGGGGCATCAGCATTGCAA ATGTTGCAGATTTTGCGAAACCTCCTGAGAAGATTTCTTATCCTCAGCAGATAGCTGTGACATGTACTGGAATCATCTGGTCCCGCTACAGCACCGTGAT AACGCCGAAAAACTGGAATCTGTTTAGCGTAAATGTCGCAATGGCTGCAACAGGGATCTATCAGCTGTCCCGTAAATTACGGCATGACTACTCTTCTGAG AAAGAGCCTGCACTTGCCGAAGAATAA
AA sequence Show only first row Show all	>Lus10023745 pacid=23148370 polypeptide=Lus10023745 locus=Lus10023745.g ID=Lus10023745.BGIv1.0 annot-version=v1.0 MATSKLQALWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKISYPQQIAVTCTGIIWSRYSTVITPKNWNLFSVNVAMAATGIYQLSRKLRHDYSSE KEPALAEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	0	1
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	1.0	0.9714
AT4G17960			unknown protein		Lus10000314 [exp]	1.4	0.9666
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	2.2	0.9596
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	2.4	0.9574
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	3.9	0.9651
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	5.3	0.9604
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	5.5	0.9554
AT1G55160			unknown protein		Lus10019322 [exp]	5.8	0.9399
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	8.1	0.9548
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	8.1	0.9473

Compare expression of checked genes

Lus10023745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.