Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33450 180 / 4e-59 Ribosomal L28 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011792 [exp] 275 / 5e-95 AT2G33450 178 / 1e-56 Ribosomal L28 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068500 [exp] 192 / 7e-64 AT2G33450 202 / 8e-68 Ribosomal L28 family (.1) Potri.008G169800 [exp] 184 / 1e-60 AT2G33450 194 / 1e-64 Ribosomal L28 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00830 [flax] [poplar] Ribosomal_L28 Ribosomal L28 family
Representative CDS sequence Show only first row Show all	>Lus10023747 pacid=23148355 polypeptide=Lus10023747 locus=Lus10023747.g ID=Lus10023747.BGIv1.0 annot-version=v1.0 ATGGCGTCAGCGACAGCGGGCATGTTACTGGGGAACAACCTGAGTCTCCGCGTTCCAAGAACCAATCTTCGGTTCTCAACTCTGCATTCTTCTTCAAAGG CCTCCGCCATTTCGGAACTAGGATTCCTCGGTTATCAATTGAGTGGCATCCGAATCTCCGACCACCTCAATTCGGCCAGACCCATCTCGGCTCCATTCAG GCCGGCTCTCCAGCCCATCGTCGCCAGGAGGGTGTGTCCGTTTACAGGGAAGAAATCGAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAG AAGCTTCAGTGCGTCAACTTGCAGTATAAGAAGCTTTGGTGGGAAGGAGGGAAGCGCTTCCTCAAGCTCCGTTTATCCACTAAAGCTTTGAAGACCATCG AGAAGAATGGGATCGATGCCGTCGCTAAGAAGGCCGGTATTGATCTTAGCAAGATGTAA
AA sequence Show only first row Show all	>Lus10023747 pacid=23148355 polypeptide=Lus10023747 locus=Lus10023747.g ID=Lus10023747.BGIv1.0 annot-version=v1.0 MASATAGMLLGNNLSLRVPRTNLRFSTLHSSSKASAISELGFLGYQLSGIRISDHLNSARPISAPFRPALQPIVARRVCPFTGKKSNRANKVSFSNHKTK KLQCVNLQYKKLWWEGGKRFLKLRLSTKALKTIEKNGIDAVAKKAGIDLSKM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	0	1
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	2.4	0.9757
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	3.2	0.9752
AT2G33450			Ribosomal L28 family (.1)		Lus10011792 [exp]	3.5	0.9704
AT2G30695			unknown protein		Lus10008364 [exp]	5.9	0.9703
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	6.7	0.9729
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	7.9	0.9559
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	8.1	0.9697
AT4G21445			unknown protein		Lus10002594 [exp]	8.5	0.9637
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	8.8	0.9691
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10030091 [exp]	10.2	0.9661

Compare expression of checked genes

Lus10023747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.