Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28600 754 / 0 NPGR2 no pollen germination related 2 (.1) AT2G43040 561 / 0 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 521 / 2e-176 NPGR1 no pollen germination related 1 (.1) AT3G11540 47 / 3e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011793 [exp] 1412 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 741 / 0 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 732 / 0 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 718 / 0 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 706 / 0 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10020725 [exp] 556 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029803 [exp] 550 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 543 / 0 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 538 / 0 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169500 [exp] 1073 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 1047 / 0 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 850 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 592 / 0 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G016000 [exp] 575 / 0 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 565 / 0 AT1G27460 868 / 0.0 no pollen germination related 1 (.1) Potri.019G025600 [exp] 45 / 0.0002 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 45 / 0.0002 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075700 [exp] 44 / 0.0006 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023748 pacid=23148340 polypeptide=Lus10023748 locus=Lus10023748.g ID=Lus10023748.BGIv1.0 annot-version=v1.0 ATGAGACTTAAGGATCGGATTCAAAAGTGGAAAATCGGGTTTAGCTTGAGATTCGGGAAAATGATGAAGTGTATGCGTTCAGGGGAGCAGTTCAGAGTGG ATGATATGACTGTTTCCTCTTCCGAGTCTTTGGCAACTAAAGACTATTCAGCAAGTGGATATTCCTCTCGCGCTGCTGAGCTTGATTCCAAGCTTGATAA TAGCAACATTGAAGAAGCTGAGTCCTCTCTTCGCGAGAGCGGTTATCTTAATTATGAGGAAGCAAGAGCATTGTTAGGGAGGCTGGAGTATCAAAAGGGA AATATCGAAGGTGCGCTTCATGTCTTTGAAGGAATTGACATAACCGCTGTCACTTCAAGGATGAAAGTCAGTCTATCTAAGAAAGTGGAGCAGAATAGAC GCCGGTCTCAGAGTGATCCTTCTCCAGCAATGTCTATGCATGCAATCACCTTGCTCCTAGAGGCAGTCCTTCTCAAGGCAAAATCATTACAAGGTCTAGG AAGGTTTCAAGAGGCTGCTCAGTCTTGTAAAATAATTATGGATACTGTTGAGTCTGCACTGCCAGATGGTATATCCGAACAAGTTTCTGGCGACAACAAG CTGCAAGAAATTCTGAACAAAGCTGTGGAATTACTTCCTGAGCTGTGTAAACTAGCTGGTGCACCTGAAGAAGCTATAGTGGCATATCGACGAGCCCTCC TCTATTACTGGAATCTAGACACAGAAACAACTGCTAGGATACAGAAAGAGTTTGCTATGTTCCTATTGTACAGTGGCACTGATGCGATCCCTCCAACATT GCGTTTCCAGATGGAAGGATCTTTCGTGCCAAGAAATAACATAGAAGAGGCAGTCCTTCTGTTACTGATTCTGTTGAGAAAATTTGCTCTCAGAAAGATT GGATGGGACCCATCAGTCATGGATCACCTATCTTTTGCGTTATCTGTATCTGGGGAATTGAGGTCCCTTGCTTATCAGGTGGAGGAGTTGCTTCCTGGCA CTATAGATAGACAGGAGAGATTCTTCACACTGTCTCTTTGCTATCACGGAGATGGCGACAATGAAGTTGCTTTAAATCTTCTGAGGAATTTCTTAAAAGA CAGGGAGAATAAAAGCTGTACCATGGAACTGTTACTAGCTTCTAAGATCTGTGCAGAGAATTCATTGTGTGTTGATGAGGGGATCACATACGCCTGTAAA GCTCTATGCGACCCCGGAAGATGTGTCCAAATGGCAGGTGTTACAAACTGCTTGTTGGGTCTTCTACTGTCAAATAAATCAAGATCAGTTGCTTCCGATT CTGAGAGGTTCTCGAAACAGTCAGAGACAATCGAGAAACTTGAGCTTGCTGAAAGAATGATGAAACAAAAGGATCCGAACATCATATACTGCCTTAGTCT AGAAAATGCTGAGCAGAGGAAGTTAGATGCTGCATTGTCTTATGCAAAGCAGGTTTTCAAATTGGAAGCTGGGTCTTCAATTAGAAGTTATGTGCTTTTG GCTCGGATATTATCTGCTCAAAAACGGTTCATTGATGCCGAGACTGTGATCAATGCTGCGCTTGATCAGACTGGAAGGTGGGATCATGGGGAACTACTTC GAACAAAAGCAAAACTGCAAGTAGCACAGGGCCAGCTAAAGAGTGCAATTGAGACATACACTCACCTTCTTGCCATTCTCCAAGTTCGAACCAAAAATTC AGGAATGGAGAAGAAACTGCTCTATAAGAGTAGCAGGAACCGTGATAGGAAACTGGAAATGGAGACATGGCACGATCTAGCTAACGTATATACGGGTATG TCTCAATGGCGGGATGCTGAGGTGTGCCTTTCGAAATCCATGGCTATCAACCCGTATTCTGCATCAAGATGGCACTCCACAGGTGTACTGTATGAAGCAA AGGGAATGCAACAAGAAGCAGTAAAAGCGTATAAAGCCGCATTAGATGTTGAACCAAATCATGTCCCAAGCTTGATATCAACTGCTTGTGCCCTCAAACG CGTTGGTGTAAACTCATTGCCAATCATTAAAAGCTTCCTGACAGATGCTCTTCGACTGGACAAGCTGAACCATTCTGCGTGGCACCAGCTTGGATTGATC TACAAGGCTGATGAGTGTGCATCTGCACTTGATGCTATGGAGTGCTTTGAGGCTGCTGCGATGCTAGAAGAAACTGCTCCGATAGAGCCCTTCAGATGA
AA sequence Show only first row Show all	>Lus10023748 pacid=23148340 polypeptide=Lus10023748 locus=Lus10023748.g ID=Lus10023748.BGIv1.0 annot-version=v1.0 MRLKDRIQKWKIGFSLRFGKMMKCMRSGEQFRVDDMTVSSSESLATKDYSASGYSSRAAELDSKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKG NIEGALHVFEGIDITAVTSRMKVSLSKKVEQNRRRSQSDPSPAMSMHAITLLLEAVLLKAKSLQGLGRFQEAAQSCKIIMDTVESALPDGISEQVSGDNK LQEILNKAVELLPELCKLAGAPEEAIVAYRRALLYYWNLDTETTARIQKEFAMFLLYSGTDAIPPTLRFQMEGSFVPRNNIEEAVLLLLILLRKFALRKI GWDPSVMDHLSFALSVSGELRSLAYQVEELLPGTIDRQERFFTLSLCYHGDGDNEVALNLLRNFLKDRENKSCTMELLLASKICAENSLCVDEGITYACK ALCDPGRCVQMAGVTNCLLGLLLSNKSRSVASDSERFSKQSETIEKLELAERMMKQKDPNIIYCLSLENAEQRKLDAALSYAKQVFKLEAGSSIRSYVLL ARILSAQKRFIDAETVINAALDQTGRWDHGELLRTKAKLQVAQGQLKSAIETYTHLLAILQVRTKNSGMEKKLLYKSSRNRDRKLEMETWHDLANVYTGM SQWRDAEVCLSKSMAINPYSASRWHSTGVLYEAKGMQQEAVKAYKAALDVEPNHVPSLISTACALKRVGVNSLPIIKSFLTDALRLDKLNHSAWHQLGLI YKADECASALDAMECFEAAAMLEETAPIEPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	1.4	0.8860
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	1.4	0.8758
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	1.7	0.8700
					Lus10001494 [exp]	3.3	0.8302
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	3.5	0.8508
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	5.7	0.8536
AT2G48060			unknown protein		Lus10029972 [exp]	6.2	0.8284
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10018700 [exp]	6.9	0.7964
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	7.1	0.8208
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10042850 [exp]	7.1	0.8529

Compare expression of checked genes

Lus10023748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.