Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011795 [exp] 87 / 3e-20 ND 42 / 4e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023749 pacid=23148241 polypeptide=Lus10023749 locus=Lus10023749.g ID=Lus10023749.BGIv1.0 annot-version=v1.0 ATGATGATGGGGCTAATAGGTGGTGGGAGGGAAAGTAAGAGGATTGCTCTCTTCTCATTGTTTTGCTTCCATGTTTTGGTAGCGGCTGTTTTTGCCAGGG ATGTAGTCACTGTCGGGAGAGATGACGAGGAGGTCAAGACCCTCATCGGCAAGGGCGGTGGCTTTGGAGGTGGTGCCGGAGGTGGCGGTGGTTTTGGTGG CGGTGCTGGAGGAGGTGGAGGTTTTGGCGGTGGTGCCGGAGGTGGTGGTGGTTTTGGTGGCGGTGCCGGAGGAGGTGGAGGTTTTGGCGGTGGTGCTGGA GGTGGTTTTGGGAAAGGTGGTGGCATTGGCGGCGGGATTGGCAAAGGTGGAGGCGCCGGTGGTGGTATCGGGAAAGGTGGAGGGCTCGGTGGCGGGACAG GAAAGGGTGGCGGACTTGGTGGTGGAGTTGGAAAGGGCGGTGGGATCGGCAAAGGTGGAGGACTTGGTGGTGGAGGAGGTGTTGGTGGTGGGATTGGAAA AGGAGGAGGAGTTGGCGGCGGGGTTGGGTAG
AA sequence Show only first row Show all	>Lus10023749 pacid=23148241 polypeptide=Lus10023749 locus=Lus10023749.g ID=Lus10023749.BGIv1.0 annot-version=v1.0 MMMGLIGGGRESKRIALFSLFCFHVLVAAVFARDVVTVGRDDEEVKTLIGKGGGFGGGAGGGGGFGGGAGGGGGFGGGAGGGGGFGGGAGGGGGFGGGAG GGFGKGGGIGGGIGKGGGAGGGIGKGGGLGGGTGKGGGLGGGVGKGGGIGKGGGLGGGGGVGGGIGKGGGVGGGVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23450			unknown protein		Lus10023749 [exp]	0	1
					Lus10011795 [exp]	2.8	0.7803
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10003123 [exp]	16.7	0.7110
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10015245 [exp]	16.9	0.7791
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	21.3	0.7561
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10029090 [exp]	28.9	0.6242
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	42.1	0.7146
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	45.6	0.6958
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	49.4	0.6918
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10042755 [exp]	50.5	0.6683
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10009821 [exp]	61.5	0.6738

Compare expression of checked genes

Lus10023749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.