Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53630 180 / 6e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003983 [exp] 360 / 1e-126 AT3G53630 207 / 1e-67 unknown protein Lus10024421 [exp] 201 / 1e-63 AT3G53630 200 / 3e-64 unknown protein Lus10025312 [exp] 58 / 8e-11 AT3G53630 66 / 1e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082400 [exp] 207 / 7e-67 AT3G53630 197 / 8e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023752 pacid=23151480 polypeptide=Lus10023752 locus=Lus10023752.g ID=Lus10023752.BGIv1.0 annot-version=v1.0 ATGAGCTCATTCAACAACACCACGACCACCCCTAACTTCGACAACCTCCTCCTCCGTACCCTAATGGGCCGTCTCCAAGTCCGTCCTCCCACCACCACCT CCTCCCAACCCTCTAAATCCCTCGAGGACCTCCTCTTCGACGCTGTCACCGACCTACCCGCCGATGACGATGACGAGGAAGACAACGATGACCTCGACCT CAACGCCGACAAGACCCAGCTACGCAAGGAAGAGGCCAGGCTCGAGAAGGAGATCATCCGGGTGATTCTTTCCGGGAATACCGATTCCCTCAAGCCCAAC TCGGGTCAGGCGGTTACTATCCGCGAGCACCATATATGCGTCGGCTTCCACCAGGAGAAGGACTCCGATTATAGGGTGTGGGAGTGGCATGGTCACATCA TGCTGTTCGACGATGAGAACGGCTACAACCCTGAGTACATCTACGGAAATTACTTCGAGAGGTTGCTTGGCGGCGCTGCGGTCAGTCGGTCGAAGAAGGA AGAAGAGAAGGAGGAAGAAGAAGACGAAGAAGAAGAAGAAGCAGAAGAGGAGGAGGAGACGACTGCCAATTTGGGGTTGAGGGAGTTGATCGATGATGGC GAATCCAATGGTGCTCGGATACTGCACAGGAATATTGGAACTGGCGCCAAGGTATGGAACATTGGAATTGCCCATTTTCTCAATTACTTTTGCTTCTTTC GAACTGCTTTTGCTGAAGCTAGCTCTGTCGTATTAGCTATTATCAAACGGAGGGATGATCAAAATGGTTAG
AA sequence Show only first row Show all	>Lus10023752 pacid=23151480 polypeptide=Lus10023752 locus=Lus10023752.g ID=Lus10023752.BGIv1.0 annot-version=v1.0 MSSFNNTTTTPNFDNLLLRTLMGRLQVRPPTTTSSQPSKSLEDLLFDAVTDLPADDDDEEDNDDLDLNADKTQLRKEEARLEKEIIRVILSGNTDSLKPN SGQAVTIREHHICVGFHQEKDSDYRVWEWHGHIMLFDDENGYNPEYIYGNYFERLLGGAAVSRSKKEEEKEEEEDEEEEEAEEEEETTANLGLRELIDDG ESNGARILHRNIGTGAKVWNIGIAHFLNYFCFFRTAFAEASSVVLAIIKRRDDQNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53630			unknown protein		Lus10023752 [exp]	0	1
AT3G53630			unknown protein		Lus10003983 [exp]	1.0	0.9536
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	3.5	0.9439
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	4.5	0.9410
AT5G20600			unknown protein		Lus10027609 [exp]	5.5	0.9478
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10005086 [exp]	11.7	0.9085
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	12.5	0.9399
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	12.5	0.9316
AT2G25670			unknown protein		Lus10017738 [exp]	13.5	0.9294
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	13.6	0.9361
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	13.9	0.9273

Compare expression of checked genes

Lus10023752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.