Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53670 53 / 2e-08 unknown protein AT2G37480 52 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003982 [exp] 330 / 2e-115 AT2G37480 91 / 2e-22 unknown protein Lus10024420 [exp] 154 / 2e-46 AT2G37480 67 / 1e-13 unknown protein Lus10025314 [exp] 148 / 7e-44 AT2G37480 62 / 9e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082100 [exp] 99 / 7e-25 AT3G53670 52 / 3e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023755 pacid=23151448 polypeptide=Lus10023755 locus=Lus10023755.g ID=Lus10023755.BGIv1.0 annot-version=v1.0 ATGGACGTTGGCCATCGTGGTGCTTCTGGTGTGGATGATCTGGTGGATGAGGACGATTTCAAACTTGGGAAGTTGAGATCTGAAAGTAGTACCCAAGTAA CAGATTCATTGGGTGGAGATGATAACAATGATGAATGCAATGGTTCTGAAGCAGCTGATCCATCTGGGCCTAAACAGGCTGTCAATAAGTGCTTGGAGAA ATCAGCAACATATCCTTGTTCTGACGATAAAGTATCTAGTCTAGATACTTCAAATGATGAGGACCCAGACACTGAATTGCAGTCGCCTTTCTCCAAGGAG CCCCTGCAGCGCTCCAAGTCAATGCCGCCTGTATCTGCGATGAAAGGTAGCAGGGAGAAAGTGGGGAAGGAAGTAAGGCAGCTGAGCGTAACATGGGCTC CTGATGTGTATGATCCTGTTCCTAATTCTCTCTGTCACACTGTTAAGAGCAGCGGCAGCAAAAAGAAATCCAGAAGGGACAGAGAGAAAGATAAGAAGAA TGGGAAGAGGGGACAGAAGGGAAGCAACAACTCTTCTTCTCGAGGGGGCAGTAGTAAGGACAAGAAGCAAACCAGGAGAAAGCACGATAAGTCGTATAAG CATGATATCAGTGAGGATGTATACGCTGATCCTCCTGGTAGCCTTGGATACGATGTGGCCAGCTCAGACATGTGTGGTAGCAGCTTCCTGAAGAAGACCG TAAGAGAGTTCCATTACCCAGTTGCTGAGGCTCTATGA
AA sequence Show only first row Show all	>Lus10023755 pacid=23151448 polypeptide=Lus10023755 locus=Lus10023755.g ID=Lus10023755.BGIv1.0 annot-version=v1.0 MDVGHRGASGVDDLVDEDDFKLGKLRSESSTQVTDSLGGDDNNDECNGSEAADPSGPKQAVNKCLEKSATYPCSDDKVSSLDTSNDEDPDTELQSPFSKE PLQRSKSMPPVSAMKGSREKVGKEVRQLSVTWAPDVYDPVPNSLCHTVKSSGSKKKSRRDREKDKKNGKRGQKGSNNSSSRGGSSKDKKQTRRKHDKSYK HDISEDVYADPPGSLGYDVASSDMCGSSFLKKTVREFHYPVAEAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37480			unknown protein		Lus10023755 [exp]	0	1
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10041075 [exp]	1.7	0.9307
					Lus10015401 [exp]	2.0	0.9288
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	2.2	0.9454
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	2.8	0.9309
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	6.5	0.9179
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	6.6	0.9048
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	7.5	0.9119
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	7.6	0.8863
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	7.7	0.8929
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	7.9	0.9126

Compare expression of checked genes

Lus10023755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.