Plant FIBer expression Database

Lus10023756 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37500 205 / 3e-65 arginine biosynthesis protein ArgJ family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003981
[exp]
222 / 2e-71 AT2G37500 605 / 0.0 arginine biosynthesis protein ArgJ family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G115900
[exp]
211 / 5e-67 AT2G37500 615 / 0.0 arginine biosynthesis protein ArgJ family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0635 DmpA_ArgJ PF01960 ArgJ ArgJ family
Representative CDS sequence
>Lus10023756 pacid=23151435 polypeptide=Lus10023756 locus=Lus10023756.g ID=Lus10023756.BGIv1.0 annot-version=v1.0
ATGGCCACCATCCTTGGTGTAGATGGGGACACCAGTACAAATGATACAGTCATTGCTTTGGCTAGTGGGTTATCCGGAACAACCATGGTCTCTTCTTTAG
ACAGCCATGAAGCAGAACAACTTCAAGCAGGCCTTGATGCTGTTACTGTAGTTGGGGCAGAAAGCGAGATGGATGCGGCCAAGATTGCTCGTTCAGTAGC
ATCATCATCTCTTGTTAAGGCAGCAGTGTATGGTAGAGATCCAAACTGGGGACGGATTGCAGCTGCTGCTGGCTACGCAGGGATTCCATTCGACCAAAAC
AAGCTGCGTATATCGCTAGGGGACACTCTGCTAATGAACAATGGACAACCTTTGTCGTTTGACAGGGATGGTGCAAGTAATTATCTGAAGAAGGCAGGTG
AGAGCCATGGCACGGTTGGAATCCAGATATCTGTTGGAGATGGAAGTGGAGGCGGGCAAGCATGGGGGTGCGATTTGAGCTATGATTATGTGAAGATTAA
TGCAGAATACACAACATAG
AA sequence
>Lus10023756 pacid=23151435 polypeptide=Lus10023756 locus=Lus10023756.g ID=Lus10023756.BGIv1.0 annot-version=v1.0
MATILGVDGDTSTNDTVIALASGLSGTTMVSSLDSHEAEQLQAGLDAVTVVGAESEMDAAKIARSVASSSLVKAAVYGRDPNWGRIAAAAGYAGIPFDQN
KLRISLGDTLLMNNGQPLSFDRDGASNYLKKAGESHGTVGIQISVGDGSGGGQAWGCDLSYDYVKINAEYTT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37500 arginine biosynthesis protein ... Lus10023756
[exp]
0 1
AT3G23600 alpha/beta-Hydrolases superfam... Lus10000668
[exp]
2.2 0.6627
AT3G23600 alpha/beta-Hydrolases superfam... Lus10000665
[exp]
8.1 0.6589
AT5G16990 Zinc-binding dehydrogenase fam... Lus10007832
[exp]
13.0 0.6313
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Lus10042128
[exp]
20.4 0.6016
AT1G20920 P-loop containing nucleoside t... Lus10025525
[exp]
38.9 0.6199
AT1G52280 AtRABG3d RAB GTPase homolog G3D (.1) Lus10025790
[exp]
56.9 0.5897
AT4G37440 unknown protein Lus10011519
[exp]
71.9 0.5070
AT1G64660 ATMGL methionine gamma-lyase (.1) Lus10000880
[exp]
109.1 0.5431
AT3G02100 UDP-Glycosyltransferase superf... Lus10015752
[exp]
119.1 0.5400
Lus10005608
[exp]
119.9 0.5587

Lus10023756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.