Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37500 276 / 1e-91 arginine biosynthesis protein ArgJ family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003981 [exp] 380 / 8e-133 AT2G37500 605 / 0.0 arginine biosynthesis protein ArgJ family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G115900 [exp] 302 / 1e-101 AT2G37500 615 / 0.0 arginine biosynthesis protein ArgJ family (.1.2) Potri.015G112400 [exp] 135 / 1e-40 AT2G37500 125 / 2e-34 arginine biosynthesis protein ArgJ family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0635 [flax] [poplar] DmpA_ArgJ PF01960 [flax] [poplar] ArgJ ArgJ family
Representative CDS sequence Show only first row Show all	>Lus10023757 pacid=23151444 polypeptide=Lus10023757 locus=Lus10023757.g ID=Lus10023757.BGIv1.0 annot-version=v1.0 ATGAATGAGGGTGCTAATTACATACCAGCAGCTCCTATTTCCCTTCCTCAAGGACAGTGGAAGGAGATTCCTGGAGGTATTACAGCACCTAGTGGATTCA GAGCTGCTGGTATTTATGGCGGTTTAAGAGCCAAAGGGGAGAAACCTGATCTTGCACTTGTCACTTGTGATGTTGATGCCATATCTGCAGGGGCATTTAC TACGAACATGGTTGCTGCAGCACCTGTACTGTATTGTAAAAATATATTAGAGTTATCGGAAACGGCGCGTGCCGTGTTAATAAATGCTGGCCAAGCAAAT GCAGCAACCGGAGATGCAGGTTATCAGGACGTGCTAGAATGTGCTGATGCTATTGCTAAGGCAGGAAGTTATGGACTTTGGTTTCTGCTTCTTAAAATAA ATCCGCATGAAGTTCTTATTGAATCCACAGGTGTGATTGGTCAAAGAATAAAGAAGGAAGCTCTTCTAAATTCACTTCCAAAACTGGTTAGCTCGCTCTC AACCTCCAATGAAGGGGCAGGCTCAGCAGCGGTGGCAATTACAACAACTGACCTTGTGAGCAAGAGCGTAGCAATTGAGTCCCAGGTGTGTGCACGGCTA AGTTCTTGA
AA sequence Show only first row Show all	>Lus10023757 pacid=23151444 polypeptide=Lus10023757 locus=Lus10023757.g ID=Lus10023757.BGIv1.0 annot-version=v1.0 MNEGANYIPAAPISLPQGQWKEIPGGITAPSGFRAAGIYGGLRAKGEKPDLALVTCDVDAISAGAFTTNMVAAAPVLYCKNILELSETARAVLINAGQAN AATGDAGYQDVLECADAIAKAGSYGLWFLLLKINPHEVLIESTGVIGQRIKKEALLNSLPKLVSSLSTSNEGAGSAAVAITTTDLVSKSVAIESQVCARL SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37500			arginine biosynthesis protein ...		Lus10023757 [exp]	0	1
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036597 [exp]	1.7	0.6523
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10023088 [exp]	3.2	0.5676
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	21.8	0.6276
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	21.9	0.6055
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10022718 [exp]	35.0	0.5547
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031368 [exp]	36.7	0.5616
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10032653 [exp]	51.8	0.5377
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	57.2	0.5068
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	80.0	0.5083
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10038929 [exp]	162.8	0.4449

Compare expression of checked genes

Lus10023757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.