Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37510 151 / 8e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 102 / 4e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 93 / 1e-24 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G18630 88 / 1e-22 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT3G46020 84 / 7e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G26420 85 / 1e-20 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G13850 82 / 1e-20 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT1G73530 82 / 3e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 85 / 8e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 78 / 4e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003980 [exp] 256 / 5e-89 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 107 / 2e-28 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 106 / 4e-28 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013306 [exp] 82 / 3e-20 AT5G06210 94 / 3e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032591 [exp] 81 / 8e-20 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10040519 [exp] 83 / 6e-19 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10027035 [exp] 82 / 1e-18 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029426 [exp] 82 / 1e-18 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10021154 [exp] 80 / 2e-18 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130300 [exp] 99 / 4e-27 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 99 / 5e-27 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 96 / 8e-26 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 89 / 1e-22 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 86 / 8e-22 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 85 / 1e-21 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G207100 [exp] 85 / 6e-21 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.015G057400 [exp] 84 / 3e-20 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 84 / 4e-20 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.008G022200 [exp] 85 / 5e-20 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10023758 pacid=23151466 polypeptide=Lus10023758 locus=Lus10023758.g ID=Lus10023758.BGIv1.0 annot-version=v1.0 ATGGCGTTCGCATCCATCTTCCGACGGTCTTTGGCCGGAGCTTCATCATCTCCTTCGTCAATTGTAGGAAACCAGTTCGCTTCCACCCGTCTTTACGGAA CTCTCACTTCCCCCAAGCTCTTCATTAGCGGCCTCTCAAGGTTGACAACTGATGAGAAACTCAAGGAGGCATTTGCACCTTTTGGCCACCTTGTTGAAGC TAAAGTGATTATGGATCGAGCGAGCGGGAGATCTAAGGGCTTCGGGTTTGTAACATATGATTCAATAGAGGATGCCGAGAAAGCTAAAGCGGAAATGAAC GCCAAGTTCTTGGACGGATGGGTTATATTTGTGGACCCTGCAAAGCCTAGGGAGTTTGGTTTAAGACCACCACCACCTCAGCAGCAGCACCAGCAGCAGT ACCAGCAGCAGAATCCAGCTGCTGACCCGTCCGGGCTTGGATTCAGGACTAACAAGACGGTTGGATGGTGCGGTTAA
AA sequence Show only first row Show all	>Lus10023758 pacid=23151466 polypeptide=Lus10023758 locus=Lus10023758.g ID=Lus10023758.BGIv1.0 annot-version=v1.0 MAFASIFRRSLAGASSSPSSIVGNQFASTRLYGTLTSPKLFISGLSRLTTDEKLKEAFAPFGHLVEAKVIMDRASGRSKGFGFVTYDSIEDAEKAKAEMN AKFLDGWVIFVDPAKPREFGLRPPPPQQQHQQQYQQQNPAADPSGLGFRTNKTVGWCG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	0	1
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	3.0	0.8691
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	3.5	0.8655
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	8.5	0.8503
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	9.9	0.8307
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	14.8	0.8388
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	15.2	0.8222
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014210 [exp]	15.6	0.8272
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	16.4	0.8344
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	17.1	0.7915
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	17.2	0.8297

Compare expression of checked genes

Lus10023758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.