Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09470 516 / 0 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003979 [exp] 731 / 0 AT3G09470 602 / 0.0 Major facilitator superfamily protein (.1.2) Lus10019528 [exp] 45 / 0.0001 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10006288 [exp] 44 / 0.0003 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10020560 [exp] 43 / 0.0003 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 43 / 0.0004 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083700 [exp] 558 / 0 AT3G09470 541 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G005100 [exp] 45 / 8e-05 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05978 [flax] [poplar] UNC-93 Ion channel regulatory protein UNC-93
Representative CDS sequence Show only first row Show all	>Lus10023760 pacid=23151436 polypeptide=Lus10023760 locus=Lus10023760.g ID=Lus10023760.BGIv1.0 annot-version=v1.0 ATGGATGTTGCTAATCCCAGAGACGAAGAGTCACCGTTGGTCCCTGCTGTTGACCGGAATCTGCATCAGCTTCCTAAACCGACCAAGAACCACACTAGAG ATGTCCATATTCTGAGCTCCGCCTTCTTGCTCATTTTTCTCGCTTATGGCGCTGCTCAGAATCTCGAGACTACAGTCAATTCGCAAGGGGATTTGGGGAC GATTTCGCTGGGGATATTGTACGTGTCCTTCGCCGTCTTCTCTGTGACTGCGTCTTTGGTGGTTCGAGCTTTGGGTTCTAAGTATGCGATTGTTCTTGGG ACTACTGGGTATTGGCTGTTTATTGCTGCTAACCTGAAGCCCACATGGTATACTTTGGTACCAGCTTCTGTTTACCTAGGCTTTGCTGCATCAATCATAT GGGTTGGGCAGGGTACATATCTCACTTCTACAGCACGTAGTCATGCCAGTGATCACAGTTTGCATGAGCCTACTGTTATTGGCAGCTTCAATGGAGAGTT TTGGGGCATGTTTGCTGCTCATCAGTTTGTAGGAAACCTTATCTCCCTTGCTCTTCTGAAGGATGGAACGGATGGAACTACCAGAGGCACAACTCTGTTG TTCGTTGTGTTTCTTGGATTCATGACCTTAGGCACAATTCTAATGTGCTTCATAAGCAAAAGGGATGGTAAAAGAGACGAGGGAGCAACAGAATCTCCAA GCAGTTTCTGTTCTTCTCTTGCATCACTGACGACCAGTATCATCACCCCTTTGCTTGACTTACGAATGTGGTTAATCATCCCTCTTATAGCTTATTCAGG ATTACAGCAGGCATTTGTATGGGCTGAATTTACAAAAGAGATTGTGAAGCCAGCCATTGGCGTCTCGGGTGTTGGAGGTGCTATGGCAGTTTATGGGGCT TTTGATACTATCTGTGCATTGACAGCTGGTCGGCTTACATCTGGTCTTCGTTCAATTACTTGGATAGTATCCTTTGGATCGATTCTTCAGGCTCTTGTCT TCCTCTGGATTCTGCTCAACTATAGGTTAACCAGCGGAGTACTGGGCATTCTATACCCACTTATCATGGCAGCCATGTTGGGTATTGGCGATGGAGTGCT CAACACACAGCTCAACGCTTTGCTTGGCATAATTTTCAAGCAAGATATGGAAGGAGCATTTGCTCAGCTGAAGCTCTGGCAGAGTGCTTCTATCGCAGTG GTCTTCTTCCTTAGCCCGTGTATCTCGCTGCAGGCCATGCTTCTGATCATGCTAGCCGCGTTACTAATATCAGCAGCTTCCTTCCTGTTTTTATCTCTCC AGGTAGAGAAAGCTTTCTCTTCTCCGGATTCTTGA
AA sequence Show only first row Show all	>Lus10023760 pacid=23151436 polypeptide=Lus10023760 locus=Lus10023760.g ID=Lus10023760.BGIv1.0 annot-version=v1.0 MDVANPRDEESPLVPAVDRNLHQLPKPTKNHTRDVHILSSAFLLIFLAYGAAQNLETTVNSQGDLGTISLGILYVSFAVFSVTASLVVRALGSKYAIVLG TTGYWLFIAANLKPTWYTLVPASVYLGFAASIIWVGQGTYLTSTARSHASDHSLHEPTVIGSFNGEFWGMFAAHQFVGNLISLALLKDGTDGTTRGTTLL FVVFLGFMTLGTILMCFISKRDGKRDEGATESPSSFCSSLASLTTSIITPLLDLRMWLIIPLIAYSGLQQAFVWAEFTKEIVKPAIGVSGVGGAMAVYGA FDTICALTAGRLTSGLRSITWIVSFGSILQALVFLWILLNYRLTSGVLGILYPLIMAAMLGIGDGVLNTQLNALLGIIFKQDMEGAFAQLKLWQSASIAV VFFLSPCISLQAMLLIMLAALLISAASFLFLSLQVEKAFSSPDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09470			Major facilitator superfamily ...		Lus10023760 [exp]	0	1
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	1.4	0.8117
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	1.7	0.7080
AT4G14145			unknown protein		Lus10040412 [exp]	4.5	0.6809
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	4.7	0.7438
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	15.0	0.6547
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	18.3	0.6346
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	26.3	0.6696
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	30.2	0.6319
AT1G05170			Galactosyltransferase family p...		Lus10006782 [exp]	31.6	0.5913
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	31.9	0.6526

Compare expression of checked genes

Lus10023760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.