Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021566 [exp] 188 / 8e-61 AT1G17930 54 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10039393 [exp] 163 / 7e-51 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005495 [exp] 161 / 8e-51 AT1G17930 54 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10037814 [exp] 151 / 3e-48 ND 37 / 0.001 Lus10022091 [exp] 163 / 2e-47 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10033313 [exp] 153 / 3e-46 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005482 [exp] 140 / 2e-43 AT1G17930 41 / 1e-04 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004830 [exp] 142 / 5e-43 AT1G17930 48 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005957 [exp] 142 / 4e-42 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10023763 pacid=23151449 polypeptide=Lus10023763 locus=Lus10023763.g ID=Lus10023763.BGIv1.0 annot-version=v1.0 ATGCATGAGAAGTCGATATTAGCCGTGGGGAGCGGTTTAGTGGATGAGGATGCATACAGGGTAAGGGAATGGCGGGGTAAGTGTAAGGGGATGGTGGGGA GCATGTCTCTACTTCAGTCTTGGATTCACGAGTACTTCCCTATTACTCGTGCTACTAGACTAGTGGCCCGGGAGCGGGATGATGTCGAGGCCTTAGTTGG GTGGTGGAGCAGTAGCGAGCTGTCAGATAGATCATATGAGTTCATGCATCATCGTTTAGAGTACTACCGTCATCTGCTTAATGATATGACCGCACGGGAT GTGATCCGGCTGCCATTTGGGTCACATCTCGTGGTAGAGGTTCCTGATTCGACGTTTCATGGCTTGATTCGGTTCGCGACGACAGCAGAGTACTATGATC CGACATGTGTGGTTAGATAG
AA sequence Show only first row Show all	>Lus10023763 pacid=23151449 polypeptide=Lus10023763 locus=Lus10023763.g ID=Lus10023763.BGIv1.0 annot-version=v1.0 MHEKSILAVGSGLVDEDAYRVREWRGKCKGMVGSMSLLQSWIHEYFPITRATRLVARERDDVEALVGWWSSSELSDRSYEFMHHRLEYYRHLLNDMTARD VIRLPFGSHLVVEVPDSTFHGLIRFATTAEYYDPTCVVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023763 [exp]	0	1
AT5G42290			transcription activator-relate...		Lus10021820 [exp]	1.0	0.9353
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	8.0	0.9090
AT5G23510			unknown protein		Lus10029154 [exp]	8.9	0.8583
					Lus10036765 [exp]	9.8	0.9090
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	9.9	0.8024
AT2G16190			unknown protein		Lus10011284 [exp]	11.3	0.9090
AT1G24620			EF hand calcium-binding protei...		Lus10029660 [exp]	12.3	0.7702
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	12.6	0.9090
					Lus10006395 [exp]	13.9	0.9090
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10029233 [exp]	14.5	0.7788

Compare expression of checked genes

Lus10023763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.