Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37550 424 / 3e-146 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT3G53710 424 / 7e-146 AGD6 ARF-GAP domain 6 (.1.2) AT4G17890 126 / 3e-32 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 126 / 4e-32 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 117 / 4e-29 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT4G05330 99 / 7e-23 AGD13 ARF-GAP domain 13 (.1) AT4G21160 96 / 1e-21 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G17660 93 / 1e-21 AGD15 ARF-GAP domain 15 (.1) AT5G54310 94 / 1e-20 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G07940 89 / 5e-19 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003978 [exp] 536 / 0 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 536 / 0 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10003977 [exp] 343 / 3e-117 AT2G37550 215 / 4e-67 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10038317 [exp] 145 / 8e-42 AT2G37550 166 / 5e-50 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10000903 [exp] 123 / 5e-31 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 123 / 8e-31 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 117 / 4e-29 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10004125 [exp] 110 / 3e-27 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10012991 [exp] 102 / 6e-26 AT3G53710 103 / 5e-27 ARF-GAP domain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084000 [exp] 451 / 2e-156 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.016G095100 [exp] 417 / 3e-143 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.001G142100 [exp] 124 / 4e-31 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.003G092300 [exp] 120 / 4e-30 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.004G035800 [exp] 97 / 2e-21 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 93 / 2e-21 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G044100 [exp] 96 / 3e-21 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G098500 [exp] 94 / 5e-21 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 94 / 5e-21 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G127000 [exp] 95 / 6e-21 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10023766 pacid=23151460 polypeptide=Lus10023766 locus=Lus10023766.g ID=Lus10023766.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTCGACGCCTCCGGGATCTCCAATCGCAACCTGCGAACAAGATCTGCGTGGACTGCTCCCAGAAGAATCCCCAATGGGCCTCCGTCTCCT ACGGCATCTTCATGTGCCTCGAGTGCTCCGGTAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCTTGGTCCGAGAT CCAGATCAAGAAGATGGAGGCCGGTGGCAACGAAAACCTCAACACCTTCTTATCACAGCGAGGGATCCAGAAGGAGACCGACATCGTAGCCAAGTACAAC ACCAAGGCCGCCGCAGCTTACCGCGATCGGATCCAGGCTTTGGCTGAAGGCTTTAGATCTTCTGATGACATGAGGAGGAATCATACCGTTGGCGATTTCA GGGCTAATGGCGGCGGCGGAGGAATGAGCGATGGTCGGTCGAGGTCCAAATCAACGGAGGATATTTATACTAGATCACAATTGGAGGCGTCTGCTGCTAG TAAAGAAACTTTCTTTGCCAGAAGAATGGCGGAGAACGAATCCAAGCCCGATGGGATCCCGCCATCGCAAGGTGGCAAGTATGTTGGATTTGGATCCAGT CCTGCTCCTTCTCAGATGAATAATTCACAGCCAGATGTGTTATCTGTTGTCTCTCAGGGATTTGGAAAGCTGTCTCTGGTTGCGGCTTCAGCGGCTAGTG TTGTTCAAGCAGGCACAAAAGAGATATCGTCTAAGGTGAAGGAAGGTGGTTATGATCATAAGGTAAACGAGACTGTCAGTGTTGTTACTGCAAAAACAAC TGAGATTGGATACAAGACATGGGGAATCATGAAAGGTGTCATGGCAATGGCTAGTCAGAAGGTGGAGGAATATGCTAAAGAGGGTGGGTGGAAGAATGAG AATGAGGCTAACGGGGGTTATCACGAATTCAATAAGCAGCAAGGTAGTGGATGGAATCCAAATGCCGGTGCAGGACAGTCATCATCAGTGGGAAATTATA ACTCAGGTGGAAGCTATAACTCAAGCGGGAACTACAATTCAAATGGTAGCTATACCTCAAGCAACAACTATAGCTCAAGTGGGAATAATAATAATAATAA TTCTGATAGTTCATGGGACGATTGGGATCAGAAAGAAAGCAGCAGGAAAGCAGATAACAAGAAAGTGAGTGGATCAAACAGCAGTGACGGGTGGGCTGGA TGGGACGATGGAAAAGATGATGGATTTGATGATAGCTTCTATCAGTCTGCACATAATAATATAGCTACTGCCACTGGGAAGAATGGGAAATCAGATTCTA CATGGACAGGCGGAGGCTTTGCTTAA
AA sequence Show only first row Show all	>Lus10023766 pacid=23151460 polypeptide=Lus10023766 locus=Lus10023766.g ID=Lus10023766.BGIv1.0 annot-version=v1.0 MAAARRLRDLQSQPANKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNENLNTFLSQRGIQKETDIVAKYN TKAAAAYRDRIQALAEGFRSSDDMRRNHTVGDFRANGGGGGMSDGRSRSKSTEDIYTRSQLEASAASKETFFARRMAENESKPDGIPPSQGGKYVGFGSS PAPSQMNNSQPDVLSVVSQGFGKLSLVAASAASVVQAGTKEISSKVKEGGYDHKVNETVSVVTAKTTEIGYKTWGIMKGVMAMASQKVEEYAKEGGWKNE NEANGGYHEFNKQQGSGWNPNAGAGQSSSVGNYNSGGSYNSSGNYNSNGSYTSSNNYSSSGNNNNNNSDSSWDDWDQKESSRKADNKKVSGSNSSDGWAG WDDGKDDGFDDSFYQSAHNNIATATGKNGKSDSTWTGGGFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	0	1
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	1.4	0.8783
AT1G36730			Translation initiation factor ...		Lus10000448 [exp]	2.2	0.8718
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	2.4	0.8679
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	3.0	0.8770
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10012825 [exp]	3.2	0.8897
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	4.9	0.8756
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10011837 [exp]	5.9	0.8524
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	6.0	0.8420
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10010982 [exp]	7.2	0.8278
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	10.4	0.8355

Compare expression of checked genes

Lus10023766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.