Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023005 [exp] 171 / 2e-53 ND / Lus10006886 [exp] 143 / 1e-39 ND / Lus10034057 [exp] 81 / 4e-19 ND / Lus10006887 [exp] 83 / 3e-17 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10016947 [exp] 76 / 4e-17 ND / Lus10023006 [exp] 82 / 5e-17 ND / Lus10021668 [exp] 77 / 2e-16 ND / Lus10039353 [exp] 76 / 5e-15 ND / Lus10007415 [exp] 71 / 1e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023767 pacid=23151458 polypeptide=Lus10023767 locus=Lus10023767.g ID=Lus10023767.BGIv1.0 annot-version=v1.0 ATGCTTTTCCGGGACCTGTCGCTGGAAAACCCTCCGTCCGAACTCCATCTCTACCTTTGCCATGTCTGGAAATTGGGAAACCCGTCCACCCCGGATACGT TTTTTGCTCTGGGAAACATCTGGACAGATGTCGAGGATTTTGTAGGCAAGGTGGTTGGCGCAGGGCCACCGAACTATGTTGACCGTCCCACCGGTATCTC TGCTATTCAGAAACTAACTATTGTGGATTCAGGGTCCATCTCCCCCGTCACTTGCATGTCAACAGCTTCCCCGATATCAGGATTTCCAAAATATGGGGCT GGTCATACCGCGGGCTCAGCTTCCTGCTGCTCACCCCCCCCACCGCCGCCCTGCCCACCAAGCCCACATGCACGCCATGATACACCTATCCCTCCCGATC CCAACTATGTATACCCCATCCCTACTTACAACCCACAAGCTGGATCGTCTCAGCCTACCGCTGGTGGACTAGATCCTACCACTCCTTTTCAGCTCCAACC TTTTCCACATGTTGCACCCTCAGAATATGGTGCCTTGACTACGACCATTGCAGATCTCACTCTTGGCAGCAACAAACTCCCATGCATGTTTCGTCTCATC CATTTTTGGCGCACAAAGCCTATTGCCATAGTCGAGGAAACACTTATCCTAGGTTATACGGAGCCATCTCATACATGGGATGTGTTTGTGCTCATGAACT TGGGTAAGATCTACAAAATCCGCCAACCAACTCTCATTGCACCATATACTGGGCCACGTGCTTGCCTGGGACATGTCTCCCTCTCCATACTTCCCGAGGA CTTGCACAGACCAGTTGATGAGGATCAATCGAAACCATTCTTTCCCCATGATAACTACAACATAGCCCCAACAAACATGCCTAGACGTCTACCGCAAAGC CCTGCCGTTTGGGCAGATCGCTGA
AA sequence Show only first row Show all	>Lus10023767 pacid=23151458 polypeptide=Lus10023767 locus=Lus10023767.g ID=Lus10023767.BGIv1.0 annot-version=v1.0 MLFRDLSLENPPSELHLYLCHVWKLGNPSTPDTFFALGNIWTDVEDFVGKVVGAGPPNYVDRPTGISAIQKLTIVDSGSISPVTCMSTASPISGFPKYGA GHTAGSASCCSPPPPPPCPPSPHARHDTPIPPDPNYVYPIPTYNPQAGSSQPTAGGLDPTTPFQLQPFPHVAPSEYGALTTTIADLTLGSNKLPCMFRLI HFWRTKPIAIVEETLILGYTEPSHTWDVFVLMNLGKIYKIRQPTLIAPYTGPRACLGHVSLSILPEDLHRPVDEDQSKPFFPHDNYNIAPTNMPRRLPQS PAVWADR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023767 [exp]	0	1
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	1.4	0.9000
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	6.7	0.7973
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	7.3	0.8650
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	7.3	0.8530
					Lus10016100 [exp]	8.5	0.8529
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	8.7	0.8472
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	11.2	0.8405
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	14.7	0.7639
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	14.9	0.8410
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	15.9	0.7990

Compare expression of checked genes

Lus10023767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.