Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02440 75 / 6e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000246 [exp] 121 / 5e-36 AT5G02440 47 / 1e-07 unknown protein Lus10024400 [exp] 107 / 7e-29 AT5G02440 88 / 1e-21 unknown protein Lus10025345 [exp] 92 / 2e-23 AT5G02440 67 / 6e-14 unknown protein Lus10016560 [exp] 63 / 3e-12 AT5G02440 66 / 2e-13 unknown protein Lus10040828 [exp] 61 / 2e-11 AT5G02440 66 / 1e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084400 [exp] 126 / 2e-36 AT5G02440 78 / 5e-18 unknown protein Potri.009G030100 [exp] 105 / 1e-28 AT5G02440 98 / 1e-25 unknown protein Potri.001G238900 [exp] 101 / 5e-27 AT5G02440 81 / 4e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023770 pacid=23151464 polypeptide=Lus10023770 locus=Lus10023770.g ID=Lus10023770.BGIv1.0 annot-version=v1.0 ATGGCTCAACAACAAGAGCAAGAAGAAGGGTGGCCACTGGGGCTGAGACCCTTGAATGCCAGAGTCGGGTTGTTGAGGAATCCGGATTTCAATGGCTCAA TCTCATTCTCTACCACCGTGCTCACCAGGACTCCCAGTTCCACCACTGTTTCTTCTTCAGATCTTGATACGCAGTCAACTCAGTCTTTCTTCCACGACAA GAGCATCACATTAGGGAGCTTAATAGGATTCTCCAGCATCCTTGCACTGTCAAGAAGGTCAATGAGGGGAAGAGGAGGAAGCAGGTCAGAGAGTTTCACA AGAGGTCAAGGGCAACATAGGAAGCCAAAACCATGGATATTCTCATTATGCTCTAGGCTGACCACTGATGCAGTTGAGAGAAGAGCATCATCATCATCTT CCATGAGCAATCCTCCTTCTCTTGGCCACTTCCTTGAAGTAGAGAGAAGAGCTTCTTCCGCTACCAATGGCAACACCAAATTGTTGGAGCAGGAGGAAAA TAATGGATTTGGATCCCCATTAGTGCTTTCATCATGTCTATGTGGACAACTCATTGAATAG
AA sequence Show only first row Show all	>Lus10023770 pacid=23151464 polypeptide=Lus10023770 locus=Lus10023770.g ID=Lus10023770.BGIv1.0 annot-version=v1.0 MAQQQEQEEGWPLGLRPLNARVGLLRNPDFNGSISFSTTVLTRTPSSTTVSSSDLDTQSTQSFFHDKSITLGSLIGFSSILALSRRSMRGRGGSRSESFT RGQGQHRKPKPWIFSLCSRLTTDAVERRASSSSSMSNPPSLGHFLEVERRASSATNGNTKLLEQEENNGFGSPLVLSSCLCGQLIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02440			unknown protein		Lus10023770 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	2.0	0.8597
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	2.0	0.8763
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	4.5	0.8163
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	6.6	0.7823
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	7.1	0.8431
AT5G65920			ARM repeat superfamily protein...		Lus10012491 [exp]	7.2	0.7788
AT4G37810			unknown protein		Lus10011591 [exp]	8.4	0.7831
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	8.8	0.8063
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	9.0	0.7847
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10021113 [exp]	10.9	0.7667

Compare expression of checked genes

Lus10023770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.