Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029656 [exp] 150 / 3e-48 ND / Lus10004093 [exp] 119 / 1e-35 ND 39 / 6e-04 Lus10014888 [exp] 99 / 2e-27 ND 39 / 7e-04 Lus10032472 [exp] 93 / 1e-25 ND 35 / 0.004 Lus10029497 [exp] 87 / 2e-22 ND / Lus10022142 [exp] 77 / 3e-19 ND / Lus10011629 [exp] 61 / 1e-12 ND 39 / 6e-04 Lus10039269 [exp] 45 / 2e-06 ND / Lus10013815 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023773 pacid=23151469 polypeptide=Lus10023773 locus=Lus10023773.g ID=Lus10023773.BGIv1.0 annot-version=v1.0 ATGGACGACAAGCTTCCTCAATTGCAACAAGGGTTTTTTTGTGTCGTTGAGAGTGCGCAGATATTGGCGAAACTGATTCGTTTATCGAAGGATGCCTTCC GGTATGACGATGAAGACGTTTTCTGTCTCTGTGGGTTGTGTGCATCCCGATATATATCACACACCGCGAGCAATCTGGGGAAGAAATTCTTTGGTTGTCC CCGATATGTTTCGTTGGTTGCTTCGTTAAAAGAAAAGAAAGAGTTGGTGCAAATGGTTGGGAGATTGCAGCTAGAAGTTACGGAACTTCAACAAGCTAAT GTGTTGTTGCAAGCACAAATTGGGAGGTCAGTTAGTCCAGCGAGGACAAAGTGTGTTCATCAATCAACTTCAAGGGTAGAGAGTGTCAAATTTATGGGGA GTTAG
AA sequence Show only first row Show all	>Lus10023773 pacid=23151469 polypeptide=Lus10023773 locus=Lus10023773.g ID=Lus10023773.BGIv1.0 annot-version=v1.0 MDDKLPQLQQGFFCVVESAQILAKLIRLSKDAFRYDDEDVFCLCGLCASRYISHTASNLGKKFFGCPRYVSLVASLKEKKELVQMVGRLQLEVTELQQAN VLLQAQIGRSVSPARTKCVHQSTSRVESVKFMGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023773 [exp]	0	1
					Lus10011047 [exp]	1.0	0.9485
AT1G22630			unknown protein		Lus10018614 [exp]	5.5	0.9447
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	7.3	0.9305
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10005369 [exp]	7.5	0.9020
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	7.7	0.9065
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	9.2	0.9096
AT2G38570			unknown protein		Lus10014180 [exp]	10.2	0.9143
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10003849 [exp]	13.8	0.9246
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	13.9	0.9304
AT3G09860			unknown protein		Lus10023014 [exp]	14.5	0.8961

Compare expression of checked genes

Lus10023773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.