Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49180 446 / 3e-151 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 429 / 5e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47030 421 / 4e-141 VGDH1 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 412 / 1e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47040 407 / 8e-136 VGD1 VANGUARD1, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 395 / 1e-131 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G62170 390 / 4e-129 VGDH2 VANGUARD 1 homolog 2 (.1) AT5G27870 394 / 6e-129 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 392 / 7e-129 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 365 / 1e-119 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003968 [exp] 1095 / 0 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 448 / 1e-151 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 435 / 3e-146 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 426 / 9e-144 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 412 / 3e-138 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 410 / 4e-137 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 407 / 2e-136 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 382 / 2e-128 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037489 [exp] 371 / 8e-122 AT5G27870 480 / 3e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209200 [exp] 758 / 0 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 751 / 0 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 685 / 0 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 673 / 0 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 474 / 6e-162 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 471 / 8e-161 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 412 / 5e-138 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 393 / 2e-130 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 387 / 3e-128 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 384 / 4e-127 AT3G10710 609 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10023775 pacid=23151472 polypeptide=Lus10023775 locus=Lus10023775.g ID=Lus10023775.BGIv1.0 annot-version=v1.0 ATGGCTGGTAAAGTAGTAATTCCAGCGGTAGGGCTCCTCCTGGTGGTAGGCATTGTGATCGGTGTTGTTGCAGTCGTCCATCGTGACGGAGGCGAGACAG AGAGCGTGACCCCACATTCGAAAGCCGTAACGGAAATTTGCCAGCCCACCAACTACAAGGAAGAGTGCATGAAATCTCTGAGCTCCGCCAACAGCACCGA CCCTAAAGACCTCATCAAAGCCGGCATTGTAGCAGTGGCTGAATCAGTGAAGAAGTCATTCAACCTCAGCGACGATCTGGTGGCAAAGGCCGACAAGGAA AGCAAAAGGACCAAAACAGCTCTTTCGGATTGCAAGGAGCTTCTAGAAGACGCCAATGAGAAGCTGCAGGACATCATAGAGAAAGTTGGTGGGTCTGACA TCACAACAATCGCCAATCGGTCTGACGACTTCAGGACGTGGCTCAGCTACGTCATCGGCTACCAGGAGCTTTGTATCGACGGCTTCGACCAAGACAGCGA AGTGAGGGCTGACGTCAGGCAGAGTACCGAGGTCGGCAGTCAGCTCACAGACAACGTCCTCGAGATTTTGGCAGGGATTCAGAAAGTGCTGGGCTCATTC GGATTGAAGCTTAACTTGAGCAGCATTACTGGCGGCAACGACGGGGACCACCACCGGAGACTACTATCGGAGGAGAATGGGTATCCGACGTGGATGTCAG CGGCGGACAGGAAGCTATTAGCGTCGAACCCGAACTTGACGCCGAATGCAGTAGTGGCGAAAGACGGGAGTGGGAAGTTCAAGACCATCGGTGCAGCTCT TGCTGCTTACCCTAAGAACTTCAAGGGTAGGTATGTAATTTACGTGAAGGCCGGAGTTTATTCCGAACAAGTCACGGTTGGGAAAGGGATGAAAAACGTG TACATGTATGGTGACGGTCCAAGGAAGAGCATTATAACTGGGCATTTGAGCTTTGCCAAGGATGGACTCGGCACGTGGAAAACAGCTTCTTTCGTTGTGG AAGCTGACGGCTTTATCGCAAGATCGATGGGGTTCCAGAACACAGCAGGGCCTGAAGGACACCAGGCAGTTGCAGTGAGGTCGCTCTCCGACCAGTCAGC GTTCATAAACTGCAGGCTGGATGGCTTCCAGGATACGCTATGCTACCAAGGTGGTAGACAGTTTTTCCGCAACTGCGTCCTCTCCGGTACAATAGACTTC TTGTTCGGGTACGGCTCGGTTGTGGTGCAGAATTCTCTAATCATTGTGAGGAGGCCCATGGACAATCAGTTCAACACTGTCACTGCGGATGGTAGGAAGG AGAAGGGCCAGCCCACCGGGATTGTGATCCATAACTGTAGGATTGTTCCGGAGGCAAAGCTGGTCGCTGACAGGTTTAAACTGAAGACTTACTTGGGAAG GCCCTGGAAGGCATATTCGACGACGGTGGTAATGGAGTCGGAGCTTGGGGATTTGATACAGCCGGATGGATGGAAGGAGTGGGATGGGACACAGTTCATT GACACACTGTATTATGCGGAGTATGCGAACAGAGGACCCGGTGCCAACACTGCTAGGAGGCTTAAGTGGAAGACCATTAGATTCTTGTCCAAGAATGAAG CCATGAAGTGGACTGTTGAATCTTTCCTCCGTGGCAGGGACTGGGTTTCCAACACTGGTGCTAATGTCATTTATGGCCTCAAGGCTTAA
AA sequence Show only first row Show all	>Lus10023775 pacid=23151472 polypeptide=Lus10023775 locus=Lus10023775.g ID=Lus10023775.BGIv1.0 annot-version=v1.0 MAGKVVIPAVGLLLVVGIVIGVVAVVHRDGGETESVTPHSKAVTEICQPTNYKEECMKSLSSANSTDPKDLIKAGIVAVAESVKKSFNLSDDLVAKADKE SKRTKTALSDCKELLEDANEKLQDIIEKVGGSDITTIANRSDDFRTWLSYVIGYQELCIDGFDQDSEVRADVRQSTEVGSQLTDNVLEILAGIQKVLGSF GLKLNLSSITGGNDGDHHRRLLSEENGYPTWMSAADRKLLASNPNLTPNAVVAKDGSGKFKTIGAALAAYPKNFKGRYVIYVKAGVYSEQVTVGKGMKNV YMYGDGPRKSIITGHLSFAKDGLGTWKTASFVVEADGFIARSMGFQNTAGPEGHQAVAVRSLSDQSAFINCRLDGFQDTLCYQGGRQFFRNCVLSGTIDF LFGYGSVVVQNSLIIVRRPMDNQFNTVTADGRKEKGQPTGIVIHNCRIVPEAKLVADRFKLKTYLGRPWKAYSTTVVMESELGDLIQPDGWKEWDGTQFI DTLYYAEYANRGPGANTARRLKWKTIRFLSKNEAMKWTVESFLRGRDWVSNTGANVIYGLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	0	1
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015818 [exp]	11.9	0.5981
					Lus10032831 [exp]	13.6	0.6699
AT3G58760			Integrin-linked protein kinase...		Lus10037851 [exp]	13.9	0.7740
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10013961 [exp]	13.9	0.7142
					Lus10001722 [exp]	14.5	0.7573
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	16.7	0.6231
AT1G10380			Putative membrane lipoprotein ...		Lus10036702 [exp]	29.5	0.5310
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10042434 [exp]	35.7	0.5846
AT5G03050			unknown protein		Lus10012904 [exp]	66.7	0.6309
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	72.0	0.6048

Compare expression of checked genes

Lus10023775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.