Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58350 60 / 1e-09 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 59 / 2e-09 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G02930 55 / 3e-08 F-box/RNI-like superfamily protein (.1) AT3G18150 54 / 6e-08 RNI-like superfamily protein (.1) AT3G18750 45 / 7e-05 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G04910 41 / 0.0009 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035564 [exp] 199 / 9e-62 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10026868 [exp] 156 / 6e-46 ND 41 / 6e-04 Lus10014161 [exp] 159 / 1e-45 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006513 [exp] 155 / 3e-44 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038468 [exp] 147 / 8e-42 ND / Lus10038470 [exp] 147 / 8e-42 ND / Lus10014229 [exp] 146 / 1e-41 ND / Lus10038967 [exp] 152 / 2e-41 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10029433 [exp] 145 / 3e-40 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 67 / 2e-12 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.016G134600 [exp] 67 / 6e-12 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.013G155100 [exp] 66 / 9e-12 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 66 / 1e-11 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.013G036300 [exp] 46 / 3e-05 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 45 / 5e-05 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 44 / 0.0002 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 43 / 0.0002 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.001G337200 [exp] 41 / 0.001 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023776 pacid=23151427 polypeptide=Lus10023776 locus=Lus10023776.g ID=Lus10023776.BGIv1.0 annot-version=v1.0 ATGGTAGTTTTCAGAACCACGTGCATCAAGTTCTCTCCCTCCGTTCCGATAGTAGTAGTGTCATTAGAGTTGCAACATACATCTGGCCATTATGCGAGAG CAAGGGGTCTGTTCGATAGGATAAAAAAATACGCTGCTTCCCATGACGCTCAGGAGCTTCCCATTTGTACCTGGTCTTCTGATTTTCCGGATGTCTTCGG ATCGTTACACGCCTGTTATCAGTCCATGAAAGTTCTTGAGTCGACGGCAACAAGGTTTCCAAAGCGTTATGATGAATTATGGTCTTGTTTGCCAATGCTT GAATCTCTTACTCTGACTCGATGCGTCCTTAGTTTGGATGATGATTCCTTTGGTAATTTTCCCAGATTGGGAACCCTAAAGCTGCTCCAGTGTTCATGTT ATAGGTCTGGCATTTTAACTAATGTTCTGAAAGTAACTGGACCCAATTTGCTTAACTTGGAGATCACTTTGCCAGAATTCGTCTGTTTTCAAATAGTCGC TCCCAAACTCCAATCTTTCATTCTTAAGATGAATAATATGTGTATGATAACTGACGTGTCCATGTGGAATCTTACTTCCCTTACTCGTGCAAACATAAAA ATTGGAGGTTATGAGGACGAGTTTTGCAGCAAAGATTTTTGTGGACTTGATGCCATCAAGCAACAGGTGCTCGAGGAGTTTGTGAACTTGTTCAAGGTTC TACATAATGTACAAGCTCTCGATCTGGAGGTTGAAATGCTTGAGATAGTGATCTTCGGGAAGTTGCCAGAGACATTCCACAACATCAAGGATGTTGAAGC ACAGAATTTTGTGGGGAAATATCTTGAGCCTGCTTCGAAGAGATTATCAACTAAAGAGCTACTTTTGGACCCTTCTCTAGCACTTGATGAACCAGAATTG CTACCCATCTCAACGTTATCCTTTCGTAGCTCACCGACTTCTAGCTTTGGAACTGAGGGAGATGATGATGGTGACGATGCCGACTTTACAGGATGA
AA sequence Show only first row Show all	>Lus10023776 pacid=23151427 polypeptide=Lus10023776 locus=Lus10023776.g ID=Lus10023776.BGIv1.0 annot-version=v1.0 MVVFRTTCIKFSPSVPIVVVSLELQHTSGHYARARGLFDRIKKYAASHDAQELPICTWSSDFPDVFGSLHACYQSMKVLESTATRFPKRYDELWSCLPML ESLTLTRCVLSLDDDSFGNFPRLGTLKLLQCSCYRSGILTNVLKVTGPNLLNLEITLPEFVCFQIVAPKLQSFILKMNNMCMITDVSMWNLTSLTRANIK IGGYEDEFCSKDFCGLDAIKQQVLEEFVNLFKVLHNVQALDLEVEMLEIVIFGKLPETFHNIKDVEAQNFVGKYLEPASKRLSTKELLLDPSLALDEPEL LPISTLSFRSSPTSSFGTEGDDDGDDADFTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	2.6	0.8119
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	4.9	0.8381
AT4G26410			Uncharacterised conserved prot...		Lus10035249 [exp]	6.9	0.7945
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	6.9	0.8271
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10029603 [exp]	7.4	0.7549
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	7.8	0.8472
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	8.1	0.8276
AT3G51300		ATRAC11, ROP1, ...	ARABIDOPSIS THALIANA RHO-RELAT...		Lus10014258 [exp]	9.7	0.8258
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10001807 [exp]	11.0	0.7788
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10020444 [exp]	11.0	0.7494

Compare expression of checked genes

Lus10023776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.