Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33520 1095 / 0 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 570 / 0 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT1G63440 327 / 1e-96 HMA5 heavy metal atpase 5 (.1) AT5G44790 286 / 3e-82 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G30110 209 / 6e-56 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 191 / 9e-50 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 143 / 1e-35 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 136 / 1e-32 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT5G62670 83 / 6e-16 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT1G80660 80 / 4e-15 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038070 [exp] 462 / 2e-148 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10008309 [exp] 325 / 6e-96 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 305 / 5e-89 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10038364 [exp] 267 / 2e-75 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 263 / 6e-74 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 225 / 2e-61 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10006955 [exp] 204 / 5e-54 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 202 / 2e-53 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10009789 [exp] 181 / 3e-49 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G205400 [exp] 1214 / 0 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 1212 / 0 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 562 / 0 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G125600 [exp] 327 / 4e-97 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 319 / 4e-94 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 312 / 1e-91 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 311 / 3e-91 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G075700 [exp] 281 / 2e-80 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 280 / 4e-80 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.006G076900 [exp] 201 / 8e-53 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0137 [flax] [poplar] PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10023777 pacid=23151457 polypeptide=Lus10023777 locus=Lus10023777.g ID=Lus10023777.BGIv1.0 annot-version=v1.0 ATGGAGGCTTCCTGTGCAGCAACTACATCAGCTGTCTTCACCATCTCGAAAGCCCTGAATCATGGTTTTGCCCACAAGGTTCCCTCGCTTCGCTCAGCTC GACTAGTCAATCGCCGGTTCGGAAGCACTCATGCGCAGTACGGCACAACTGCTTTCCTTTCTGCGGCTACACATCCTCGGAACTTCAGGGCCTTGTCTTC GATTCTGCCATTCCTACGCCACCGTTTGGACTGCATTCCTAGCTCGGTTGCGTATTTTGCCACATCTAACGGCAGCGGCGGTGGTGGTGGTGAGGGGGGC GATACTGGTGGCGGTGGAGGCGGACGACCGGGCGGCGGAGATGCGAAGTCGAATTTGGTTGGAGGCGGGGTGGAGGAGAGCTCCAGACGGTCGTCGGATG TTATCATGCTAGATGTTGGAGGAATGACATGTGGAGGATGTGCAGCCAGTGTTAAAAGGATACTGGAAAACCAACCGCAAGTATCTTCTGCCAGTGTCAA TCTTACGACAGAGACTGCAATAGTGTGGCCCGTCTCTGAAGCAAAAGTTGTACCTAATTGGCAACAACAGCTTGGCGAGACACTTGCTAAGCAGTTGACT GATTGTGGTTTCACTTCAAACCCTCGAGATGGCAACCGAGAGAATTTCTTCAAGAGTTTTGACAAGAAAATGAATGAAAAGCATAATCGATTAAAAGAAA GTGGTCGTGAACTAGCTGTCTCTTGGGCTCTCTGCGCCGTATGCATGATTGGCCATATGTCTCATCTTTTTGCCTCTAAGGCTTCATGGATCCACTTACT TCATTCAACAGGATTCCATCTATCTTTGTCATTGTTTACATTGCTTGGTCCTGGGCGTCAACTTATTGTTGATGGTGTGAAAAGTCTTTTTAAGGGAGCT CCAAATATGAACACCTTAGTTGGTCTTGGTGCTTTATCATCATTCAGCATTAGCTCATTCGCTGCCTTAATACCCAAGCTGGGTTGGAAGGCATTCTTCG AGGAACCAATAATGTTAATAGCATTTGTCTTGTTAGGCAGGAATCTTGAACAGAGGGCTAAAATTAAGGCAACCAGTGATATGACAGGACTTTTAAGTGT GTTACCTACAAAAGCTCGTCTTATTATTACTGAAGATGCGGAAGATTCAGACTCAATTGTTGAAGTTCCTTGTTCTAATCTCTCCGTTGGAGATCACATT GTCGTGCTTCCTGGAGACCGTGTTCCGGCAGATGGAATAGTTAGAGCTGGTAGGAGTTCTATTGATGAGTCAAGTTTTACAGGGGAGCCTTTACCCGTGA CAAAAGTTCCTGGGAATGAAGTGGCAGCTGGAAGTATAAATATCAATGGTTCTCTGACAATTGAAGTGCGGAGGCCTGGTGGTGAGACTACAATAGGTGA TATTATTCGCTTGGTGGAAGAAGCTCAAAGTACAGAAGCTCCGGTCCAGCGGTTGGCCGATAAGGTGTCTGGGCACTTTACTTATGGAGTGATGGCACTC TCAGCCTCAACATTTTTATTTTGGAATCTCTTTGGGACTCGTATTCTACCTGCTGCTCTTCACCATGGGAATGCTGTTTCACTTAGCCTGCAGCTTGCTT GCAGCGTTCTGGTTGTTGCTTGTCCATGCGCACTTGGTTTGGCAACTCCTACTGCTGTTCTGGTAGGAACTTCATTAGGGGCAAGGCGAGGTCTGCTTCT TCGCGGTGGGCATATTTTGGAGAATTTTGCCATGGTGGACACCGTTGTGTTTGATAAAACAGGGACTCTGACTGTTGGCAAACCAGTTGTGAGAAAGGTT ATTACTCTAGGGACTGGAGAAGATCAAGATTCACAGTCTAATACAAACGAAATCTGGTCAGAAAATGAATTGCTGAAACTGGCTGCCGGAGTAGAGTCTA ATACTGTTCATCCTGTTGGAAAAGCGATAGTTGATGCTGCTCAAGCTGCCAGGTGCCAAAATATGAAGGCAAAAGATGGAACCTTCTCCGAAGAACCTGG TTCTGGTGCAGTGGCCATTGTTGACAATAAGAAAGTGTCTGTTGGAACGCTAGAGTGGGTTCGAAGGAATGGAGTTGATAGAAGTGCATTAGATCCATTT GAGGAAGCTGAGGATACGAAAAATCAGTCAATTGTTTATGTTGGTGTAGATACCACACTTGCTGGCCTTATATACTTTGAAGATAAAATCCGGGATGATG CTAGACAAGTAGTTCAGACTTTGTCTGCCCGAGGAATAAATGTGTACATGTTGTCCGGTGACAAGAAGAGTGCTGCTGAGTATGTTGCATCACTTGTTGG AATTCCAAAAGACAAGGTGCTATCTGGGGTTAAACCAGATGAGAAAAAGAAATTCATTAATGAGCTCCAGATGGGTCAGCACTTGGTAGCCATGGTTGGG GATGGAATCAATGACGCTGCAGCATTAGCTTCAGCACATGTCGGAGTTGCCATGGGAGGAGGAGTTGGGGCTGCTAGCGAGGTTTCTTCGGTTGTGCTGA TGGGAAATAGGCTTTCTCAGTTGCTCGACGCACTGGAGCTAAGCAGGCTAACAATGAAGACTATAAAGCAGAACCTGTGGTGGGCATTTGCTTACAACAT CGTTGGAATCCCAATAGCGGCCGGGATGTTACTGCCTGTAACAGGGACGATGCTGACTCCATCTATAGCTGGAGGGCTCATGGGATTGAGTTCTATTGGA GTGATGTCGAATTCGTTACTCCTAAGACTCAAGTTTTCAGCAACGCAGCAGCAGGGTCAGATGAGTAGAAAGTCATCTCCCCAGAGGTCAATACTTCCTA TTACGAAATGA
AA sequence Show only first row Show all	>Lus10023777 pacid=23151457 polypeptide=Lus10023777 locus=Lus10023777.g ID=Lus10023777.BGIv1.0 annot-version=v1.0 MEASCAATTSAVFTISKALNHGFAHKVPSLRSARLVNRRFGSTHAQYGTTAFLSAATHPRNFRALSSILPFLRHRLDCIPSSVAYFATSNGSGGGGGEGG DTGGGGGGRPGGGDAKSNLVGGGVEESSRRSSDVIMLDVGGMTCGGCAASVKRILENQPQVSSASVNLTTETAIVWPVSEAKVVPNWQQQLGETLAKQLT DCGFTSNPRDGNRENFFKSFDKKMNEKHNRLKESGRELAVSWALCAVCMIGHMSHLFASKASWIHLLHSTGFHLSLSLFTLLGPGRQLIVDGVKSLFKGA PNMNTLVGLGALSSFSISSFAALIPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSVLPTKARLIITEDAEDSDSIVEVPCSNLSVGDHI VVLPGDRVPADGIVRAGRSSIDESSFTGEPLPVTKVPGNEVAAGSININGSLTIEVRRPGGETTIGDIIRLVEEAQSTEAPVQRLADKVSGHFTYGVMAL SASTFLFWNLFGTRILPAALHHGNAVSLSLQLACSVLVVACPCALGLATPTAVLVGTSLGARRGLLLRGGHILENFAMVDTVVFDKTGTLTVGKPVVRKV ITLGTGEDQDSQSNTNEIWSENELLKLAAGVESNTVHPVGKAIVDAAQAARCQNMKAKDGTFSEEPGSGAVAIVDNKKVSVGTLEWVRRNGVDRSALDPF EEAEDTKNQSIVYVGVDTTLAGLIYFEDKIRDDARQVVQTLSARGINVYMLSGDKKSAAEYVASLVGIPKDKVLSGVKPDEKKKFINELQMGQHLVAMVG DGINDAAALASAHVGVAMGGGVGAASEVSSVVLMGNRLSQLLDALELSRLTMKTIKQNLWWAFAYNIVGIPIAAGMLLPVTGTMLTPSIAGGLMGLSSIG VMSNSLLLRLKFSATQQQGQMSRKSSPQRSILPITK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	0	1
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	1.4	0.8677
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	2.0	0.8587
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	2.4	0.8606
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	4.4	0.8120
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10033378 [exp]	5.1	0.8187
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	9.5	0.8252
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	10.2	0.8112
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	11.6	0.8597
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	14.3	0.8125
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	15.1	0.8293

Compare expression of checked genes

Lus10023777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.