Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64290 228 / 4e-73 DCT, DIT2.1 dicarboxylate transport 2.1 (.1) AT5G64280 196 / 6e-61 DIT2.2 dicarboxylate transporter 2.2 (.1) AT5G12860 109 / 8e-29 DIT1 dicarboxylate transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003967 [exp] 247 / 3e-80 AT5G64290 842 / 0.0 dicarboxylate transport 2.1 (.1) Lus10002560 [exp] 113 / 5e-30 AT5G12860 841 / 0.0 dicarboxylate transporter 1 (.1.2) Lus10027368 [exp] 113 / 6e-30 AT5G12860 838 / 0.0 dicarboxylate transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050500 [exp] 228 / 5e-73 AT5G64290 707 / 0.0 dicarboxylate transport 2.1 (.1) Potri.001G310600 [exp] 204 / 1e-63 AT5G64290 652 / 0.0 dicarboxylate transport 2.1 (.1) Potri.009G053800 [exp] 110 / 8e-29 AT5G12860 801 / 0.0 dicarboxylate transporter 1 (.1.2) Potri.001G258600 [exp] 105 / 5e-27 AT5G12860 777 / 0.0 dicarboxylate transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF00939 [flax] [poplar] Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10023778 pacid=23151422 polypeptide=Lus10023778 locus=Lus10023778.g ID=Lus10023778.BGIv1.0 annot-version=v1.0 ATGGCGGGGCAATTAACGAACCTTGGTATTGTAACATGGATGTCTGGTTCTGTGGGGAAGATGCTTCAAGCTCTATCTTTGAGCTGGCCAGCCGCATTTG CGTTGCTTCAGGCTGCTTATTTCTTTATACACTACCTATTTGCGAGTCAAACTGGGCACGTTGGAGCTCTCTACTCTGCATTCCTTGCAATGCATCTAGC AGCTAATGTACCAGGAGTTGTGGCAGCACTTGCTTTGGCATATAACACTAATCTTTTTGGCGCTCTTACACATTACAGTAGTGGCCAGGCTGCTGTATAT TATGGAGCTGGATACGTTGAGCTTCCGGATGTATTCAAGGTGGGATTCACGATGGCGGTGGTGAATGCTATCATCTGGGGAATAGTTGGCTCTTTCTGGT GGAAATTCTTGGGACTATATTGA
AA sequence Show only first row Show all	>Lus10023778 pacid=23151422 polypeptide=Lus10023778 locus=Lus10023778.g ID=Lus10023778.BGIv1.0 annot-version=v1.0 MAGQLTNLGIVTWMSGSVGKMLQALSLSWPAAFALLQAAYFFIHYLFASQTGHVGALYSAFLAMHLAANVPGVVAALALAYNTNLFGALTHYSSGQAAVY YGAGYVELPDVFKVGFTMAVVNAIIWGIVGSFWWKFLGLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023778 [exp]	0	1
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031686 [exp]	5.0	0.8808
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	5.7	0.8682
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10035767 [exp]	6.2	0.8636
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	8.7	0.8583
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	14.1	0.8608
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10013629 [exp]	15.5	0.8480
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	18.0	0.8582
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	19.4	0.8547
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031105 [exp]	24.7	0.8399
AT4G16490			ARM repeat superfamily protein...		Lus10010499 [exp]	25.3	0.8420

Compare expression of checked genes

Lus10023778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.