Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64290 297 / 1e-97 DCT, DIT2.1 dicarboxylate transport 2.1 (.1) AT5G64280 263 / 3e-84 DIT2.2 dicarboxylate transporter 2.2 (.1) AT5G12860 187 / 4e-55 DIT1 dicarboxylate transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003967 [exp] 399 / 4e-137 AT5G64290 842 / 0.0 dicarboxylate transport 2.1 (.1) Lus10027368 [exp] 192 / 5e-57 AT5G12860 838 / 0.0 dicarboxylate transporter 1 (.1.2) Lus10002560 [exp] 191 / 8e-57 AT5G12860 841 / 0.0 dicarboxylate transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050500 [exp] 304 / 3e-100 AT5G64290 707 / 0.0 dicarboxylate transport 2.1 (.1) Potri.001G310600 [exp] 273 / 8e-88 AT5G64290 652 / 0.0 dicarboxylate transport 2.1 (.1) Potri.009G053800 [exp] 188 / 2e-55 AT5G12860 801 / 0.0 dicarboxylate transporter 1 (.1.2) Potri.001G258600 [exp] 187 / 5e-55 AT5G12860 777 / 0.0 dicarboxylate transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF00939 [flax] [poplar] Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10023779 pacid=23151421 polypeptide=Lus10023779 locus=Lus10023779.g ID=Lus10023779.BGIv1.0 annot-version=v1.0 ATGGAGAGCTTAGCTGCCCTTCATTCTTTCTCAGCCACCACCACTTCAATCTCCTTCCCGTATTCTCGCTCCTCCTTGCTCCACAGATCTCCACCCAAAC AACCCAGATTCTCGTCCTCCACTTCCCTCTCCTCCTCCTTCCGCCCTCTCCGATCACCACTCTGCCCCCTTCCTCTTCTTATTAAACCCCATATCTCCCT TCTTCCCGCACGTTGTTCTAAAGATCACTCTTCCTCATCCCCACCCCCGCCGGTTCAGGGAGCCAAGCTCGTCCCCCTCGTAGTTTCCGTCGGAATCGGA TTGATTGTTCGTTTCGCCGTTGCCAGGCCAGCTGCCGTTACTCCCCAGGCATGGCAATTGCTGTCGATTTTCCTCTCAACCATCGCCGGATTGGTGCTCA GTCCACTCCCCGTTGGTGCTTGGGCATTCCTCGGCCTGACCACCAGTATCGTCACCAAGACTCTGTCTTTCTCCGCTGCATTCAGTGCCTTTACCAGCGA GGTCATTTGGTTGATTGTGATTTCCTTCTTCTTCGCTCGTGGGTTTGTCAAGACTGGGTTAGGGGATAGGATTGCTACCTACTTTGTTAAGTGGCTTGGC AAGAGCACTTTGGGTTTGTCTTACGGACTCACCATCAGCGAAGCCCTCATTGCTCCTGCAATGCCCAGTACTACTGCCAGAGCTGGTGGTGTTTTCTTGC CCATCATCAAGTCCTTGTCTCTCTCCGCTGGTAGTAAGCCCGGTGACCCTTCTTCCAAGAAGCTTGGCTCTTACCTCCTCATGTCCCAGTTCCAGACAGC CGATTATTCATTTGAATTGAACTGCAGTGACAGTGATTTCTCCCTTTTCGAGCAACGCCTGCTGTTTGGCTTCTAA
AA sequence Show only first row Show all	>Lus10023779 pacid=23151421 polypeptide=Lus10023779 locus=Lus10023779.g ID=Lus10023779.BGIv1.0 annot-version=v1.0 MESLAALHSFSATTTSISFPYSRSSLLHRSPPKQPRFSSSTSLSSSFRPLRSPLCPLPLLIKPHISLLPARCSKDHSSSSPPPPVQGAKLVPLVVSVGIG LIVRFAVARPAAVTPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTKTLSFSAAFSAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG KSTLGLSYGLTISEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDPSSKKLGSYLLMSQFQTADYSFELNCSDSDFSLFEQRLLFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	0	1
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	1.4	0.8732
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	1.4	0.8794
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	3.0	0.8692
AT5G01020			Protein kinase superfamily pro...		Lus10036762 [exp]	8.4	0.8311
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	10.8	0.8518
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	12.0	0.8421
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	12.8	0.8397
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	12.8	0.8501
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	13.2	0.8441
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	13.4	0.7928

Compare expression of checked genes

Lus10023779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.