Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14050 971 / 0 MCM9 minichromosome maintenance 9 (.1) AT1G44900 271 / 9e-80 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT3G09660 253 / 5e-74 MCM8 minichromosome maintenance 8 (.1) AT2G16440 244 / 4e-70 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G07690 234 / 2e-67 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 231 / 2e-65 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 228 / 1e-64 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 220 / 3e-62 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009052 [exp] 280 / 8e-81 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009683 [exp] 261 / 2e-74 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10023169 [exp] 236 / 1e-67 AT3G09660 1038 / 0.0 minichromosome maintenance 8 (.1) Lus10038384 [exp] 236 / 1e-67 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 235 / 6e-67 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 230 / 5e-65 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 226 / 7e-64 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10002427 [exp] 219 / 7e-62 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10001452 [exp] 218 / 2e-61 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014403 [exp] 1054 / 0 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.001G070500 [exp] 275 / 6e-81 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G074000 [exp] 241 / 4e-69 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.009G121500 [exp] 238 / 3e-68 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G131900 [exp] 236 / 1e-67 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.006G188700 [exp] 230 / 6e-66 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 228 / 4e-65 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.014G121000 [exp] 226 / 1e-64 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 222 / 1e-62 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.003G157001 [exp] 48 / 4e-07 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10023780 pacid=23151447 polypeptide=Lus10023780 locus=Lus10023780.g ID=Lus10023780.BGIv1.0 annot-version=v1.0 ATGGAGACGAGGGCGTCCAGTAAGCAGCCGCACTATGCTGATGAAATGGAACGGTTTCTGATAAGTCACCATGCCCAACAGCTCTGTTCCGTTGTCCTCT CTCCCGACCCTAAGCTCCACTACCCTCTCCACATTGATTTTGCGGAGCTAATGGACGAATACCCTCCGCTTGCCAATTTCGTCTACTCTCAGCCTGCTGA GTACCTGCGCCATTTTGATCAAGCTGCTGTCCGTGCTCAAAAATCTGTCCTCAAGGTTCTGCATGCTGACGAGAAGGGGATTGAGAAGAAGTTCATTCAT GTTCGTGTTAATGTCAGCGGATCTCCACTTGAATGTCCTGAAACTTTTCCTCGCATTGGACATGTGAGGGTGAGACACAGAGGGATTCTATTAACCCTCA AAGGGACTGTAATCCGTTCAGCAGCAGTAAAGATGTACGAAGGCGAGAGGATGTATCGGTGTCGGAAATGCAAGCACGGGTTTTCTGTTTATCCTGAGCT GGAATCCAGAAACTCAATAGCATTGCCATCATTTTGCCCCTCAGAGAGGTCTAAACCCTGTGAAGGGACACGGTTTGACTGCATAGATGGGACTATATTG TGTCACGATTATCAGGAAATTAAAATTCAAGAGAGTACTCAGGTGTTGGGTGTTGGTGTTATTCCTCGCTCAGTTCCAGTAATCTTGATGGATGATCTTG TTGACATTGTTAAAGCCGGGGATGATGTCATTGTTACTGGAATTTTGACAGCAAAGTGGTCTCCGGAATTAAAAGATGTCCGCAGCAACCTGGAACCTGT GTTAATAGCTAATCATGTGAGGCGCACTAATGAGCTGAAATCAGATGTTGATATCCCTAATGATATTATGATCACGTTCAACCAGTTCTGGTCAGACTTC AAAGACTGTCCGTTAAAAGGTAGAAACACCATTCTACAAGGTGTTTGCCCCCAGGTTTTTGGACTCTTCATTGTGAAGCTTGCAGTTGCCCTAACACTTA TTGGGGGTGTGCAACATGTTGATGCTTCTGGTACAAAGATTCGAGGAGAATCTCATTTGCTTTTGGTTGGGGATCCAGGTACTGGCAAGTCTCAGTTCCT AAAGTTTGCTGCGAAGTTAAGCAACCGATCTGTTATCACCACTGGATTAGGGAGCACGAGTGCAGGCTTAACTGTAACTGCTGTCAAGGATGGAGGTGAA TGGATGTTGGAAGCTGGAGCCCTGGTGTTAGCAGATGGAGGACTTTGTTGCATTGATGAATTTGATAGCATGAGGGAACATGACAGAGCGACTATCCACG AGGCAATGGAGCAGCAGACGATAAGCATTGCAAAGGCTGGGCTTGTAACAACTCTCAGTACCAAAACAGTTGTTTTTGGTGCGACGAATCCTAAAGGACA GTATGATCCTGAACAATCTCTATCGGTCAATACGACACTCTCGGGTCCATTATTGAGTAGATTTGACATAGTGCTAGTCCTCTTGGATACAAAGAATCCC GAGTGGGATGCAGTCGTGTCATCTCACATTCTTGCAGAGGAAAAGTCGATTACAAGCAACAATCAAGAAGGTTCAGCTAGCATATGGACAGTTGCGATGC TCCGTAGGTATATTCAATTTGTAAAAGGGTACTTCAGACCTGTCCTTACTAAAGAAGCCGAGAAAGTGATATCAAACTACTTTCAACTTCAACGACAATC TGCAACTGATAATGCAGCTAGGACAACCATTCGCATGCTTGAAAGCTTGATACGCTTAGCACAAGCACATGCGAGATTAATGTTCAGAAATGAGGTGACT CAGTTGGATGCCATAATGGCTATCTTATGCATGGAATCATCCATGACCACCTCAGCGATTGTAGACAGTGTTGGAAATGCAGTCCATTCAAACTTCACGG AGAACCCCGACGAAGAATGTATCCTTTCTAACTCTTGCTCTCTTCAGTTAAAGCATTAA
AA sequence Show only first row Show all	>Lus10023780 pacid=23151447 polypeptide=Lus10023780 locus=Lus10023780.g ID=Lus10023780.BGIv1.0 annot-version=v1.0 METRASSKQPHYADEMERFLISHHAQQLCSVVLSPDPKLHYPLHIDFAELMDEYPPLANFVYSQPAEYLRHFDQAAVRAQKSVLKVLHADEKGIEKKFIH VRVNVSGSPLECPETFPRIGHVRVRHRGILLTLKGTVIRSAAVKMYEGERMYRCRKCKHGFSVYPELESRNSIALPSFCPSERSKPCEGTRFDCIDGTIL CHDYQEIKIQESTQVLGVGVIPRSVPVILMDDLVDIVKAGDDVIVTGILTAKWSPELKDVRSNLEPVLIANHVRRTNELKSDVDIPNDIMITFNQFWSDF KDCPLKGRNTILQGVCPQVFGLFIVKLAVALTLIGGVQHVDASGTKIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGE WMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISIAKAGLVTTLSTKTVVFGATNPKGQYDPEQSLSVNTTLSGPLLSRFDIVLVLLDTKNP EWDAVVSSHILAEEKSITSNNQEGSASIWTVAMLRRYIQFVKGYFRPVLTKEAEKVISNYFQLQRQSATDNAARTTIRMLESLIRLAQAHARLMFRNEVT QLDAIMAILCMESSMTTSAIVDSVGNAVHSNFTENPDEECILSNSCSLQLKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	1.7	0.9200
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	6.9	0.9111
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	9.3	0.8836
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	9.5	0.8934
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	12.4	0.9144
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10037338 [exp]	13.9	0.8326
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	14.3	0.8303
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	15.1	0.9051
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10025004 [exp]	16.0	0.8829
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10032099 [exp]	16.2	0.9014

Compare expression of checked genes

Lus10023780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.