Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37680 351 / 1e-119 PAT3, FRY1, FHY1 unknown protein AT5G02110 112 / 5e-27 CYCD7;1 CYCLIN D7;1 (.1) AT1G70210 103 / 7e-24 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT2G22490 101 / 4e-23 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 97 / 6e-22 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT3G50070 97 / 1e-21 CYCD3;3 CYCLIN D3;3 (.1) AT5G10440 91 / 4e-20 CYCD4;2 cyclin d4;2 (.1) AT4G34160 89 / 9e-19 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 87 / 2e-18 CYCD3;2 CYCLIN D3;2 (.1) AT4G03270 66 / 1e-11 CYCD6;1 Cyclin D6;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003966 [exp] 978 / 0 AT2G37680 375 / 4e-129 unknown protein Lus10029194 [exp] 105 / 7e-25 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 103 / 4e-24 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10019825 [exp] 96 / 4e-21 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 96 / 4e-21 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 88 / 9e-19 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 84 / 2e-17 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10018739 [exp] 83 / 6e-17 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10024796 [exp] 82 / 1e-16 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G100600 [exp] 370 / 1e-126 AT2G37680 353 / 2e-125 unknown protein Potri.006G088300 [exp] 208 / 4e-62 AT5G02110 165 / 4e-48 CYCLIN D7;1 (.1) Potri.007G048300 [exp] 105 / 2e-24 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.002G103500 [exp] 104 / 3e-24 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 100 / 5e-23 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.005G141900 [exp] 97 / 1e-21 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.014G023000 [exp] 96 / 5e-21 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.002G123000 [exp] 92 / 5e-20 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.008G146600 [exp] 92 / 5e-20 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 86 / 3e-18 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09783 [flax] [poplar] Vac_ImportDeg Vacuolar import and degradation protein CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023781 pacid=23151425 polypeptide=Lus10023781 locus=Lus10023781.g ID=Lus10023781.BGIv1.0 annot-version=v1.0 ATGATTGTTAATGTTAGATGGAACTTTATGTTTGGATGTGCAGGGCCGAATTTCAGGCACACATCGCCGCCAGCTTCTACACTGTTGAGCGTCGGGCAGG CCTTTTCTGGTACTCAGAATGTTTCCAGTCTACAAAAGGATGAGGCTTGGAGAGTTAACGTCCGGATTCAAGGATGTGACTTGGATCAGGGTTACCTCTG TGGCACCATGGAAGCTCTCAATGTTCCTATGGCGGATACACCGGTCGTAACTTTCTGGGAAGGAGAGATTGTTGACATCAGGAACTACACTTTCTTCACT GGAAAATGGGAGGCACTGCCAGAAGATGATTTAAGGCACTGGACCAAGTTTCCATCTTTTGCACCGTTTCAGATTCAAGTTGAAGCTGATGGCGGCAGAT CTCTTGATTTGAGCAACTATCCGTACATATTCATGAGATGGAAGGAACAATACTTTGTGAATGTTGGGACTGACTGTGGGTTAACCATAGCTGGGTTTTA CTATGTCTGCTTCTCCTGTGCTGATGGCTCCATCAATGGCTTCTATTACGATCCTAACAGCAGCCCCTTTCAGAAGCTGGAACTCAAACCTGCCAATGAG GGAAGATCAGGTTTCAGTTTTTCGTCCTATGAGTTACACCCTGCTGCAGCAGTAACACCAACTGCTGCTGCTGCGAGTACTACTAGTACTAGTGGTTTTG GGAATGTGGGAAGTTGCAAAGAAGATTGTGAAGAGGCTCTGTCTACGTGGATAGTGAAGGAGGCTAGTTATATGCCTGACCCATGCTATGTTGATTACCT TCATCGCTCCAATAGTTTGTTGTTTTCTCGCAGCAAAGCAACTCATTGGCTCCTCAAGTGTTGTAGTCGACTCAATCTCTCTGTTCCGACACTCTTCAGC GCTTCAAATTATCTCGATCGATTCATGTCCATCCACCGAGGCCTTAAATGGGAAACTTGGATGGTTGAATTGGCGACGATGGCATGTTTATCTGTTGCTA CCAAGTTTAACGAGACATGCTCAACTGCTCCTTCCTTGGATGACTTCCAGATGGAGGAGATGGACCATTGGTTCCAATCCAACACAATCAAGCAGATGGA GATGTTAATCTTACAGTCACTCCAATGGCGTCTGAGCTCCACAACTTGTCACTCTTACGCCGAGCTGCTAGTGATGAACATCACCAATTCCTTATCTATC AAACCACAACTTCAGCACCATCTATTGGCAACAACCACTCGTTTCCTTGTAGCATCTCTGCTAGAGTGGAAGTTTCAGGAGTATCGTCCAAGTTCAGTAG CTATATGTGCAGTATGGTGCAGCTTAGAAGAGTTGACGTCGTCGTGGAACCAAGATTATGATCTCAATGATATTGTTCCTCTACTCTTGAAGCAGAGCAT TCACAAGGAAGACGTGTTAAGATGCCGACAGGACATGATGATGATGATGACAATGACAATGGTGGATTGCTCTTCGCCAGGGAGCCCGGTGACGGTTCTT TCTAGAGATCGTGAACGACTTCTTGTTGATGATTCCCAAGTTGATATCTCCGTGTTTTACGAGAACATGGCGGCGGCGGCGGCGGTTAGTGGATGCAAAC TGAGAAACATGATAAAGAAGAAGAGGAAATGGGGGGAAGATATTTAA
AA sequence Show only first row Show all	>Lus10023781 pacid=23151425 polypeptide=Lus10023781 locus=Lus10023781.g ID=Lus10023781.BGIv1.0 annot-version=v1.0 MIVNVRWNFMFGCAGPNFRHTSPPASTLLSVGQAFSGTQNVSSLQKDEAWRVNVRIQGCDLDQGYLCGTMEALNVPMADTPVVTFWEGEIVDIRNYTFFT GKWEALPEDDLRHWTKFPSFAPFQIQVEADGGRSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCADGSINGFYYDPNSSPFQKLELKPANE GRSGFSFSSYELHPAAAVTPTAAAASTTSTSGFGNVGSCKEDCEEALSTWIVKEASYMPDPCYVDYLHRSNSLLFSRSKATHWLLKCCSRLNLSVPTLFS ASNYLDRFMSIHRGLKWETWMVELATMACLSVATKFNETCSTAPSLDDFQMEEMDHWFQSNTIKQMEMLILQSLQWRLSSTTCHSYAELLVMNITNSLSI KPQLQHHLLATTTRFLVASLLEWKFQEYRPSSVAICAVWCSLEELTSSWNQDYDLNDIVPLLLKQSIHKEDVLRCRQDMMMMMTMTMVDCSSPGSPVTVL SRDRERLLVDDSQVDISVFYENMAAAAAVSGCKLRNMIKKKRKWGEDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10023781 [exp]	0	1
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	1.0	0.9118
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	1.4	0.9024
AT2G35736			unknown protein		Lus10028935 [exp]	2.4	0.8843
AT5G64680			unknown protein		Lus10011265 [exp]	3.5	0.8827
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	3.9	0.8754
					Lus10031227 [exp]	4.6	0.8291
AT1G01940			Cyclophilin-like peptidyl-prol...		Lus10009237 [exp]	6.3	0.8525
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001173 [exp]	7.5	0.8649
AT1G76860			Small nuclear ribonucleoprotei...		Lus10042341 [exp]	9.6	0.8273
AT2G45520			unknown protein		Lus10015859 [exp]	10.4	0.8671

Compare expression of checked genes

Lus10023781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.