Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02120 121 / 6e-37 PDE335, OHP PIGMENT DEFECTIVE 335, one helix protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003965 [exp] 202 / 9e-69 AT5G02120 122 / 2e-37 PIGMENT DEFECTIVE 335, one helix protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088200 [exp] 144 / 1e-45 AT5G02120 119 / 7e-36 PIGMENT DEFECTIVE 335, one helix protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023782 pacid=23151462 polypeptide=Lus10023782 locus=Lus10023782.g ID=Lus10023782.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCATTTCATCTCCATCCCTTCTCCCCACTAAAGCTCTCACCTGCAACCGCTCAAGTCGCCAGCTCATGCTTCCTCCTTTCAACTGTCAGA GAACCACAACCTTACAGAAGCAACTCTCTTTCAGAGTCCAAGCTGCCAGGCTCCCTGCTGGTGTGGAGTTGCCAAAAGTTGAGCCGAAATTCAAAGCCCC ATTCCTTGGATTCACCAGGACTGCTGAAATATGGAATTCCCGTGCTTGCATGATTGGCCTCATTGGAACTTTCTTTGTCGAATTGATAATAAACAAAGGC ATACTTCAAGTGATTGGAGTTGAAATTGGGAAGGGACTGGATCTTCCTCTCTGA
AA sequence Show only first row Show all	>Lus10023782 pacid=23151462 polypeptide=Lus10023782 locus=Lus10023782.g ID=Lus10023782.BGIv1.0 annot-version=v1.0 MASSISSPSLLPTKALTCNRSSRQLMLPPFNCQRTTTLQKQLSFRVQAARLPAGVELPKVEPKFKAPFLGFTRTAEIWNSRACMIGLIGTFFVELIINKG ILQVIGVEIGKGLDLPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10023782 [exp]	0	1
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	5.0	0.9476
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	7.1	0.9359
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	9.2	0.9308
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017476 [exp]	9.2	0.9338
AT1G52590			Putative thiol-disulphide oxid...		Lus10036091 [exp]	10.7	0.9066
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007955 [exp]	11.6	0.8493
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	12.0	0.9345
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	13.4	0.9176
AT4G28660		PSB28	photosystem II reaction center...		Lus10024959 [exp]	14.2	0.8993
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	14.7	0.9263

Compare expression of checked genes

Lus10023782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.