Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02130 274 / 8e-87 NDP1 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003964 [exp] 540 / 0 AT5G02130 425 / 6e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024371 [exp] 422 / 2e-144 AT5G02130 400 / 1e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000114 [exp] 393 / 5e-135 AT5G02130 241 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010858 [exp] 297 / 6e-96 AT5G02130 289 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091400 [exp] 362 / 1e-120 AT5G02130 405 / 2e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023783 pacid=23151440 polypeptide=Lus10023783 locus=Lus10023783.g ID=Lus10023783.BGIv1.0 annot-version=v1.0 ATGGAAAAGATGATACATCGGAAACGAACTCGAGAAGAAGAAGACTTTCGTTCAGCAATCAAGCTGTCCCGATCAGCAACCGCCGTAGCCAAGACGAAGC GTTCTGGATTCAACTCCCGCAACCCTGCTATTTCCGGCCCATCGTCGGCGGCAGCGGGGACGCCCTTAAGATTGCTACATGGGGAAATGAAAGGTCCGAA TGCGAACCCGGTTGCTCTACAGATTATCGACTACGCTCTGTCCCTTACAAGGTCTCAGAAGTCAGATGAGTCGTATGGGCAAGCCATGCTGGTACTAGAG CAATGCTTCGCTTCGCAGTCTAGTGATATCGAAGATGTTGTCTCCGAGAATTCTAAGGAGATGGTCCTACTAGCCATGGCCAATCTTTCGTTTGAAAGGA CAGTCTGTTCAAAAGAGCATTCCGGAGAAACACGCCGTTGGATCGTCCTGAAATTTGGTGTGCTTGTTCAGGACGTTTTGGGCTTCAATCTGGCCGGAGG GATCGTTGTTCTGATCTCTGGTGTGTCGGGAATCGCTGCTGGACAGAGGGTCAATAAATCTGTTTGGCCTCTGGAATTTTTTCTCTTCATCTTGTCGAGT TGCTCTTGTTATCCATCGCATTGGGGAAATTTCAACGAAGCTTTGGAACAGCTGCAGAAAGTTAGAGAGTTGAACAAGGCAACTTTAGGGGTTAAAGTTT CTGCAATGGAAGCTCTTGCTGGGCTGAACTTGGAGCTGGGGAATGATGCTGCTTCATCAGTTATCGCAGATAAATGTTTAGAACTCCTGGAGAATGAAAA ATCAGCTAATACTGGTGCTGGTTTTGAGATTGCAACTGCTCGCGCTAAAGGGATCAAAGGTTTTGTCGAGCTTGTCTGCTGCAATGTTCAAGCAGCTGAG TTGCTGTTTGAAGGATTTCAGGGCAACAATGACTGTGCTCTGCCGCTTTTGTCGTTTGGAGAATTCTTGCATGCCACCCGCAATTTCTCAAAGGCAAAGG AATTATATCAGAAGGTAACTGAAGGAGTACCTGAGAACAAAGGTCTCACTGACATTAATGCATTATCGGCTTGCAACATGGCCTTGGATCAACTTCAGTT AGCCGCTACATGTGCGCTAGGTCACCTTGAAGCACACATGGGGAAATTTGGTGATGCGGAAGAAACATTAACCAAGGCACTGAACAAAAAGCAGAGTTGC TCTAGGGTACGCCCTCGTCACCCTAAAGTTGGACTAGTCTTGACCTGTTTGGCTCTCATGCTCCGGCAGAAAGCGATACAAGAACGCTCAAGTTCTCTCT TAATGCAGGAGGGACTCTATAGAAAGGCAATAGAATTGCTGAAAGTTCCACCAGCAGAATCTGAAGGTGATGAAAAAATGGGATCCTGGAGCGACATTGC AGCTCTTGCTAGAGCTGGCTACGCAGAAGCACTCTGCGTTCAAGAGAAGAGGAAGAGTGAAGGAGAGAAGATGAGAAGTTGGGCAGAAGCTCAATGGAGA AACAGCAGATTATTGCTTGCTGAGGCACTGAGAATCTCCAAATCCTCCGATAGAGTTCTGGTGATTGATGCTCGGACTGCTAGAGCTTTGTGA
AA sequence Show only first row Show all	>Lus10023783 pacid=23151440 polypeptide=Lus10023783 locus=Lus10023783.g ID=Lus10023783.BGIv1.0 annot-version=v1.0 MEKMIHRKRTREEEDFRSAIKLSRSATAVAKTKRSGFNSRNPAISGPSSAAAGTPLRLLHGEMKGPNANPVALQIIDYALSLTRSQKSDESYGQAMLVLE QCFASQSSDIEDVVSENSKEMVLLAMANLSFERTVCSKEHSGETRRWIVLKFGVLVQDVLGFNLAGGIVVLISGVSGIAAGQRVNKSVWPLEFFLFILSS CSCYPSHWGNFNEALEQLQKVRELNKATLGVKVSAMEALAGLNLELGNDAASSVIADKCLELLENEKSANTGAGFEIATARAKGIKGFVELVCCNVQAAE LLFEGFQGNNDCALPLLSFGEFLHATRNFSKAKELYQKVTEGVPENKGLTDINALSACNMALDQLQLAATCALGHLEAHMGKFGDAEETLTKALNKKQSC SRVRPRHPKVGLVLTCLALMLRQKAIQERSSSLLMQEGLYRKAIELLKVPPAESEGDEKMGSWSDIAALARAGYAEALCVQEKRKSEGEKMRSWAEAQWR NSRLLLAEALRISKSSDRVLVIDARTARAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	0	1
					Lus10033476 [exp]	1.7	0.9230
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	2.8	0.8342
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	3.7	0.8648
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	3.9	0.8362
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	4.9	0.8422
AT1G32120			unknown protein		Lus10017876 [exp]	5.8	0.7921
					Lus10020900 [exp]	7.5	0.8343
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	8.8	0.8437
AT5G02710			unknown protein		Lus10015040 [exp]	9.2	0.8012
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	9.9	0.8160

Compare expression of checked genes

Lus10023783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.