Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04610 381 / 3e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G31740 103 / 3e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003963 [exp] 811 / 0 AT5G04610 374 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016656 [exp] 115 / 3e-27 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014472 [exp] 46 / 4e-05 AT4G13330 441 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023725 [exp] 43 / 0.0005 AT4G13330 445 / 5e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234600 [exp] 459 / 1e-159 AT5G04610 397 / 1e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 97 / 3e-21 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023784 pacid=23151459 polypeptide=Lus10023784 locus=Lus10023784.g ID=Lus10023784.BGIv1.0 annot-version=v1.0 ATGGCAATGGCACTCGACGTGAAAGTCTTCGAGTCAATAGCTCCGTCACGCTTCTTAACCTTCACAATTCCTAGGCCGGAACTCCGTTCCCGCCTACTCC GAGTCGCCGTCCTCGATTCTCCCTTCCCACCGCTTAGTGGATCCTCCTCCGGTCTACAAGTGGCTGCTCTTTTCGTCCCTCTGAACCGCGAATGCGACTG GGTATTCTCCACCGAGTCCGGCCATCTCCAGCTCCTTCTCTCCTTCCCCGGTATCTCCCGCCTCATCGTGATCGGGAGAAACCCGGCCGACGAACCCGAT TCGTCAACTGACGAAAAAACCCAAGGTAACCAATATCTGGAAAATCTCCGGAGTATCTTGAAACCATTGTTAGAGGCTCTGTCCCCTAAGACTTCCGAGA ATGGAATCGTTGATGTTCCCATATGGGAATATGTCGACAATGTGATTCATAGAAAGGTCTTGGAGAGAAGAGTCGGGGATTTGACTGGCGAAATGCTTGT TGAGGATGTCGAGGTGCAGACTGAGAATCATACTTGTGATGAGAATGTTAGCGAATTTAGGAGGCGATTGAGGTTTAAGAGAATGCCAAACTTGGTTCAG ACGGAAATTAAGCTCATTCCTGGCGAGTTTGGTGAAGATGTGAAGTTTAAACCTGAGCTTGGGGTCCTCGTCCAACCTTACTTGGTGGCCATGGTGGCTA GCCTTTCCTTGATTGTTGATTGTGTCGGAACACGAATTCGAAATGGTGTAAAGTCTAAAGCTTTGTGTTTGGGAGTTGGTGGTGGGGCTTTGCCAAGTTT TCTGAGATCCCAATTGGGGTTTCAGGTGTGTGGAGTGGAGATGGATGAGGAGGTTTTAGGGATTGCCAAGCAATATTTTGGTCTTGACATTTCTCAAGTC AACGTCCATCTTGACAATGCCTTAGACTTTATGGACAAACTGGCTGGTCGAGGAAGTGACCGTAAGGAAGATTGTTGCTGTTCCGTTGAATGTAGCTTTG ATGTCATTATGGTTGATCTCGATTCCTCAGATGCAAGAAATGGTATCAGTGCTCCACCGGTGGAATTCATTGACAGAGATATCGTGTCGGCTGCAAGATT GATTCTTACAGACCATGGGATTCTGGTAATGAATGTGGTTCCTTCAATCAGATTGTCCTATGACAACTTGATAGAGCAATGCAGGGGAGTGTTCAGTGAG CTGTACGAAATCGATGTTGGAAATGGAGAGAACTTCATTCTTGTTGCAAAAAAGTCTCCTCTTCTGTCAGCAGCTGGCGATTCCAGCAACTACTTCAGTG ATAGACTCAAGGGCTTGATATCAAGGAAATACATGGACTCCATCAGGAAAATTTGA
AA sequence Show only first row Show all	>Lus10023784 pacid=23151459 polypeptide=Lus10023784 locus=Lus10023784.g ID=Lus10023784.BGIv1.0 annot-version=v1.0 MAMALDVKVFESIAPSRFLTFTIPRPELRSRLLRVAVLDSPFPPLSGSSSGLQVAALFVPLNRECDWVFSTESGHLQLLLSFPGISRLIVIGRNPADEPD SSTDEKTQGNQYLENLRSILKPLLEALSPKTSENGIVDVPIWEYVDNVIHRKVLERRVGDLTGEMLVEDVEVQTENHTCDENVSEFRRRLRFKRMPNLVQ TEIKLIPGEFGEDVKFKPELGVLVQPYLVAMVASLSLIVDCVGTRIRNGVKSKALCLGVGGGALPSFLRSQLGFQVCGVEMDEEVLGIAKQYFGLDISQV NVHLDNALDFMDKLAGRGSDRKEDCCCSVECSFDVIMVDLDSSDARNGISAPPVEFIDRDIVSAARLILTDHGILVMNVVPSIRLSYDNLIEQCRGVFSE LYEIDVGNGENFILVAKKSPLLSAAGDSSNYFSDRLKGLISRKYMDSIRKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10023784 [exp]	0	1
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	13.4	0.8283
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10043204 [exp]	23.9	0.7989
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039423 [exp]	39.9	0.7966
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	40.8	0.7956
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	43.6	0.7895
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10037771 [exp]	54.6	0.7151
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	63.0	0.7899
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	63.4	0.7318
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	64.1	0.7680
AT5G13950			unknown protein		Lus10035121 [exp]	70.4	0.7322

Compare expression of checked genes

Lus10023784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.