Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02140 378 / 4e-133 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 229 / 3e-75 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 226 / 8e-74 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 211 / 8e-68 ATLP-3 thaumatin-like protein 3 (.1) AT5G24620 214 / 4e-67 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 208 / 1e-65 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 200 / 1e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G77700 203 / 2e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 202 / 2e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 198 / 7e-63 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003962 [exp] 429 / 6e-154 AT5G02140 387 / 4e-137 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 236 / 1e-77 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10023897 [exp] 214 / 3e-69 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10025055 [exp] 207 / 7e-66 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 202 / 4e-64 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 202 / 9e-64 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032914 [exp] 200 / 2e-63 AT5G24620 353 / 1e-121 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10015591 [exp] 198 / 8e-62 AT5G24620 353 / 1e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10008304 [exp] 193 / 1e-60 AT5G40020 328 / 4e-114 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088100 [exp] 379 / 5e-134 AT5G02140 375 / 4e-132 Pathogenesis-related thaumatin superfamily protein (.1) Potri.010G200800 [exp] 321 / 3e-111 AT5G02140 339 / 4e-118 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G039200 [exp] 227 / 3e-74 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G047800 [exp] 226 / 7e-74 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G000800 [exp] 211 / 2e-67 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G173900 [exp] 208 / 2e-66 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 206 / 7e-66 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.003G020100 [exp] 204 / 8e-65 AT1G77700 274 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G004800 [exp] 205 / 1e-64 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.014G040700 [exp] 202 / 1e-64 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10023785 pacid=23151442 polypeptide=Lus10023785 locus=Lus10023785.g ID=Lus10023785.BGIv1.0 annot-version=v1.0 ATGAAATCCTTGGGCACCTCCTCCGCAGCAAAAAAGTTAAAAGACTCCAACTTTGTGTTTAAATACCATCTCCCTCCATATTCCCAATACCCAATTCAAA GACTCGGAATCAAAAACCTCTCAGAAAGCAAACCAAAGAAATATGCAGCTCCCACAGGTGGAGAGCAGCTGATACTAGTGAACAACTGCAAAGAGAGCGT ATGGCCTGGAATCCTTGGCAGTGCAGGTCAAGCCACACCGATGAACGGAGGACTACATCTTTCGAGTGGAGAGGAAGTAGTAATGGACGTGCCACAGAAA TGGTCTGGGAGAATCTGGGGAAGGCAAGGCTGCACATCTGATCAGAACGGTAAAGGAACTTGTGAAACGGGAGACTGCTCTGGCATGCTTCATTGCCAGG GTCTCGGTGGTGCCCCTCCAGCAACTGTCGTAGAGATGACCCTTGGATTGTCTTCTTCTCCTCTACACTTCTACGATGTAAGCTTGGTTGATGGCTTTAA TCTTCCAGTTTCTATGTCTCCAGTGGGAGGTGGTGTAGGTTGTGGGATTGCTTCTTGTGAAGTTGACGTTAATATCTGCTGTCCTTCGGCACTGGAATCG AGGAAAGATGGTAGGGTCGTGGGCTGCAAAAGTGCTTGCTTGGCTATGCAATCGGCTAAGTACTGCTGTACTGGTGAGTATGCCAATCCCAAGGATTGCA AGCCTACACTTTTTGCCAATCTCTTCAAGGCCATCTGCCCTAAGGCTTATAGTTATGCTTTTGATGACTCTTCCAGCCTCAACAAGTGCAGAGCTTCTCG CTATGTCATCACTTTCTGCCCACCTAAGTGA
AA sequence Show only first row Show all	>Lus10023785 pacid=23151442 polypeptide=Lus10023785 locus=Lus10023785.g ID=Lus10023785.BGIv1.0 annot-version=v1.0 MKSLGTSSAAKKLKDSNFVFKYHLPPYSQYPIQRLGIKNLSESKPKKYAAPTGGEQLILVNNCKESVWPGILGSAGQATPMNGGLHLSSGEEVVMDVPQK WSGRIWGRQGCTSDQNGKGTCETGDCSGMLHCQGLGGAPPATVVEMTLGLSSSPLHFYDVSLVDGFNLPVSMSPVGGGVGCGIASCEVDVNICCPSALES RKDGRVVGCKSACLAMQSAKYCCTGEYANPKDCKPTLFANLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCPPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02140			Pathogenesis-related thaumatin...		Lus10023785 [exp]	0	1

Compare expression of checked genes

Lus10023785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.