Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09350 522 / 0 Fes1A Fes1A (.1.2.3) AT3G53800 451 / 2e-159 Fes1B Fes1B (.1) AT5G02150 416 / 3e-146 Fes1C Fes1C (.1.2) AT3G51980 83 / 2e-17 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003961 [exp] 714 / 0 AT3G09350 523 / 0.0 Fes1A (.1.2.3) Lus10023269 [exp] 71 / 3e-13 AT3G51980 397 / 4e-137 ARM repeat superfamily protein (.1) Lus10038535 [exp] 71 / 4e-13 AT3G51980 404 / 1e-139 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088000 [exp] 577 / 0 AT3G09350 516 / 0.0 Fes1A (.1.2.3) Potri.016G100500 [exp] 570 / 0 AT3G09350 472 / 3e-167 Fes1A (.1.2.3) Potri.001G072200 [exp] 72 / 7e-14 AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1) Potri.003G158701 [exp] 63 / 5e-11 AT3G51980 251 / 3e-82 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023786 pacid=23151473 polypeptide=Lus10023786 locus=Lus10023786.g ID=Lus10023786.BGIv1.0 annot-version=v1.0 ATGGCGAAGCCAGGGCCAGATTGGGATGGGTTGCTCAAGTGGAGTCTTTCTCACTCTGATGGCACTGGGACCAATCGGAACCTCAGCGAGGAGGATAAAA AATGGTTTATGGAGGCGATGCAAGCTCAGACTGTGGATGTGGTTAAGCGAATGAAAGAGATTACTCTGGTCATGCAAACTCCCGAGGATGTCCTGGAGTC TCAAGGAGTCACTCCTACTGAGATTGAAGATATGTTGGACGAGCTGCAAGAGCATGTAGAGTCCATTGACATGGCGAACGATCTTCATTCTATTGGCGGT TTGGTTCCTCTCCTGGGTTACCTTAAGAACTCACATGCCAACATTCGAGCCAAGGCTGCGGAGGTAGTGTCTACTATTGTCCAGAACAATCCCCGAAGTC AGCAACTGGTTATGGAAGCAAATGGGCTGGAGCCTCTCTTGTCTAATTTTGCTTCAGACCCAGACGTAATTGTACGAGCCAAGGCACTTGGTGCAATATC CTCCTTGGTCCGACACAATAAACCAGCTGTCGCTGCATTCCGCCTTGCGAACAGTTATTCTGCCTTGAAGGATGCTTTGAATTCTGATAATGTGAGATTT CAAAGGAAAGCCTTGCACGTGATCCATTACTTGTTGAAAGAGAACACCTCAGATTGCACTACTCTCAATGAACTAGGGTTCCCACGCATATTGCTACATC TTGCCTCAAGCGACGATGGAGACATCCGGGAGTCTGCCCTTGGAGTCCTACTCGAGCTCGCTCAGCACTGTGTTGATTCGGAAGTCGGTAGATCAGCTGA GGAAGATGAGAAATGGAAGAGTCTTCTGGAAGAAAGGATAAACGGCATAAGCTTGATGTCACCTGAAGATTTAGGCGCAGCTAAAGAAGAGAGACTGCTC CTGGACGCTCTCTGGAAAACTTACTTCAATGAACCCTCATCTCTCCGAGAGAAGGGCCTCCTCGTGCTCCCTGGAGAAGATGCGCTGCCACCTGATGTTG CGGGCAAGCAATTCGAACCTCCTCTTCGAGCATTGGCCGCAAACCGGAACACCATCTCCGAGAAGAAGCAGGCTCCTCTTTTGTTAGGACCATGA
AA sequence Show only first row Show all	>Lus10023786 pacid=23151473 polypeptide=Lus10023786 locus=Lus10023786.g ID=Lus10023786.BGIv1.0 annot-version=v1.0 MAKPGPDWDGLLKWSLSHSDGTGTNRNLSEEDKKWFMEAMQAQTVDVVKRMKEITLVMQTPEDVLESQGVTPTEIEDMLDELQEHVESIDMANDLHSIGG LVPLLGYLKNSHANIRAKAAEVVSTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVIVRAKALGAISSLVRHNKPAVAAFRLANSYSALKDALNSDNVRF QRKALHVIHYLLKENTSDCTTLNELGFPRILLHLASSDDGDIRESALGVLLELAQHCVDSEVGRSAEEDEKWKSLLEERINGISLMSPEDLGAAKEERLL LDALWKTYFNEPSSLREKGLLVLPGEDALPPDVAGKQFEPPLRALAANRNTISEKKQAPLLLGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10023786 [exp]	0	1
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10028919 [exp]	3.2	0.9450
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	3.5	0.9412
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	6.0	0.9324
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	6.9	0.9334
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	11.2	0.9205
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	11.5	0.9196
AT5G35320			unknown protein		Lus10011963 [exp]	12.7	0.9078
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	13.4	0.9074
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10027485 [exp]	13.6	0.8006
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	14.5	0.9030

Compare expression of checked genes

Lus10023786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.