Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52950 43 / 0.0005 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006887 [exp] 279 / 1e-85 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10021668 [exp] 178 / 3e-53 ND / Lus10027612 [exp] 188 / 2e-52 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10042979 [exp] 182 / 5e-50 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10025008 [exp] 159 / 7e-43 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001889 [exp] 139 / 2e-39 AT1G52950 42 / 6e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10010590 [exp] 142 / 9e-37 ND / Lus10036312 [exp] 136 / 3e-34 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10008725 [exp] 123 / 1e-32 ND 38 / 0.003
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023787 pacid=23151468 polypeptide=Lus10023787 locus=Lus10023787.g ID=Lus10023787.BGIv1.0 annot-version=v1.0 ATGTTTCTGTCTGAACACTCGCCGAAAAATCCTCCGGTTGAACTCAATCTTTGCCTCCGCCACATGTGGAAGCTGGGGAACCCATCCACACCCGACACAT TTTTCGCTATGGGCACCATCTGGACTGACGCCGAGGATGTGCGGATCCAGGGCGATGCTCTTCGTAATTTTGCAGGCTTTCTACAGAAACGGATTGTTGT CGGCTACGTTTACAAGATTTCGAACTACTCACTTCGCACACCCCGTGAGAAATACCGTACATGCACCTACCCGCATTGGTTGGCTCTAACTGCTGCTACT GAGTTCGCCCTACAGCCTGCTTCGGACCCGCTGTTTGGCCCGGAGGTCCTTGAATATGTCCCCTTCAACAAGTTCCCTTCCCGGATGGGGAAGTGCCCTT ATTTGATAGATTTCGTTGGTAAAGTTGTTGGGGCCGGGCCACCAAATTACATCGGCCCACCGGCGGTGCAGAAGTTGACAGTTATGGACAAGAGGAACCA GCATACCGATGTGTGGCTACGATTCTGGATTTTGATAGGGAGAAGCATTGGTGTTATAGAGCATGCCCATTGTGTTCCCGCGCTGTTGTTGCAAATGGTC ATGACTTTTGGTGCAGCGAACATGACACAGTTCTCACACCAGATCCCTCTTGCGCGCCATGACACACCTATCCCTCCCGATCCAAATTACGTGTTCCCTA TCCCTACTTATGTACCACCGACCGAAACATCATTGCCTGCTCACACGTTAGCTGCTTCTATTCCTTTGGACCTCCATGACCCTCCAAGTGCCCCTGTTAC TCTCCGTGGCTGCACGCTAGCTCTGGAAAAGGCCACCACCTCTCCACAAAAGAAACATGCACCGGCCCTGAAGGCAAAACCTGGTCCGAAGACAAAATCT GGTCCAAAGGCAAAACCTGGTCCGAAGTCAAAACCTGCTCCGGAGGAAAAACCTGCTCCAAAGGAAGCTGACCCTATTAAGAAGAAGCCTCAATCAAAGC ATGTGGCCCCAAGAACGAACCCTCCAACTGCCATAACGAGGAATCGAGCCAAAACCCTTCTTCCACCTACTACTGTCTCGGAGACGCTTCCTGCCAAACG GCTTCGTTCGACTACAGCTCCGATCCCACCCTGCCAAACGGCTTCGCTCGACTACAGCTTCGATCCCACCAGATATTTCTACAACAAGCATCCCTACTGC TTCTCAAGCTACACCAGGCCAGCTTCCTTCTGCTGCTTTGTAACTTCTTCTCCACTGGCTACTGTAAAACAAGAACACCTTGCAACAAATGCTTTTTGCT GTCCTCCCACTTCATCAATCCGGAAACTCCCTACAATACCACAACAATCGAAATTTCCTCTGGAATCAGCTCCTGCTGTTCGTCGGACACTGTTTACTGA CTGA
AA sequence Show only first row Show all	>Lus10023787 pacid=23151468 polypeptide=Lus10023787 locus=Lus10023787.g ID=Lus10023787.BGIv1.0 annot-version=v1.0 MFLSEHSPKNPPVELNLCLRHMWKLGNPSTPDTFFAMGTIWTDAEDVRIQGDALRNFAGFLQKRIVVGYVYKISNYSLRTPREKYRTCTYPHWLALTAAT EFALQPASDPLFGPEVLEYVPFNKFPSRMGKCPYLIDFVGKVVGAGPPNYIGPPAVQKLTVMDKRNQHTDVWLRFWILIGRSIGVIEHAHCVPALLLQMV MTFGAANMTQFSHQIPLARHDTPIPPDPNYVFPIPTYVPPTETSLPAHTLAASIPLDLHDPPSAPVTLRGCTLALEKATTSPQKKHAPALKAKPGPKTKS GPKAKPGPKSKPAPEEKPAPKEADPIKKKPQSKHVAPRTNPPTAITRNRAKTLLPPTTVSETLPAKRLRSTTAPIPPCQTASLDYSFDPTRYFYNKHPYC FSSYTRPASFCCFVTSSPLATVKQEHLATNAFCCPPTSSIRKLPTIPQQSKFPLESAPAVRRTLFTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023787 [exp]	0	1
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	8.3	0.7584
AT2G02148			unknown protein		Lus10035090 [exp]	9.6	0.7271
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	12.6	0.6687
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	13.5	0.7442
AT2G06040			unknown protein		Lus10033320 [exp]	22.1	0.7227
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	23.0	0.7056
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	23.9	0.7263
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	25.6	0.7371
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10035746 [exp]	26.5	0.7069
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	31.4	0.6668

Compare expression of checked genes

Lus10023787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.