Plant FIBer expression Database

Lus10023788 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38520 102 / 5e-26 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003969
[exp]
172 / 1e-52 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G063900
[exp]
135 / 2e-38 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10023788 pacid=23151453 polypeptide=Lus10023788 locus=Lus10023788.g ID=Lus10023788.BGIv1.0 annot-version=v1.0
ATGGTTGACAGACTTTTCGTATGTTCTGAAGTTGATCGAATGCAGGAACGCTTCCAAGTTGAAGGAGCTGGTAAGTTGTCAAGCGGAGATGTTGAGAGAA
AAAGTGGACAAGCCGATCACACACATCCTTTAAGAATCCCAACTGATTCTGGAGGTCTTACATACCGGCGGCACCCGCAGTCCAGCACGTTCCTCCGTTC
AGCATCCCAAAAATCCTCTCGAGCTCTAGTTTGTGGCCTGGTTCTGTTGAATTGTGCTGGCGGGATGAACAACAAGGCCATTGTGGATGATTGGAGGATA
AGACTGTTGTTACCTTTGTTTTGGTTCATCGACTTTTTGTTGAAGGAACCATCCATTGCATCAGCCATCTTTGAACGTGTCAAACAGAGTTCGGGAAATT
GGGGTGATCAGATCATTAGAGGACCAGCATGCGATGAAGGTGCATTGGATGCCTTTGTTTCGATAGTAACAGGGCCACCGGGGCCGAATCCTGTGAACTT
GATGCAGACTATTTCTCATACTATGGGGAGACGAGGACCCTTTCACGCCTCTTGA
AA sequence
>Lus10023788 pacid=23151453 polypeptide=Lus10023788 locus=Lus10023788.g ID=Lus10023788.BGIv1.0 annot-version=v1.0
MVDRLFVCSEVDRMQERFQVEGAGKLSSGDVERKSGQADHTHPLRIPTDSGGLTYRRHPQSSTFLRSASQKSSRALVCGLVLLNCAGGMNNKAIVDDWRI
RLLLPLFWFIDFLLKEPSIASAIFERVKQSSGNWGDQIIRGPACDEGALDAFVSIVTGPPGPNPVNLMQTISHTMGRRGPFHAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38520 alpha/beta-Hydrolases superfam... Lus10023788
[exp]
0 1
AT3G55590 Glucose-1-phosphate adenylyltr... Lus10014608
[exp]
1.7 0.8285
AT3G06440 Galactosyltransferase family p... Lus10043102
[exp]
3.5 0.8206
AT5G15940 NAD(P)-binding Rossmann-fold s... Lus10016771
[exp]
6.7 0.7875
AT5G16610 unknown protein Lus10010975
[exp]
7.5 0.7601
AT1G19485 Transducin/WD40 repeat-like su... Lus10018573
[exp]
7.7 0.7852
AT5G52110 CCB2, HCF208 HIGH CHLOROPHYLL FLUORESCENCE ... Lus10005770
[exp]
13.3 0.7502
AT1G68190 CO B-box zinc finger family prote... Lus10034625
[exp]
13.5 0.7454
AT3G58590 Pentatricopeptide repeat (PPR)... Lus10020138
[exp]
14.8 0.7311
AT4G10180 FUS2, DET1, ATD... FUSCA 2, DE-ETIOLATED 1, light... Lus10032487
[exp]
15.0 0.7448
AT5G52110 CCB2, HCF208 HIGH CHLOROPHYLL FLUORESCENCE ... Lus10027422
[exp]
17.0 0.7725

Lus10023788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.